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The map label for this gene is torR

Identifier: 209396267

GI number: 209396267

Start: 1240648

End: 1241340

Strand: Reverse

Name: torR

Synonym: ECH74115_1230

Alternate gene names: 209396267

Gene position: 1241340-1240648 (Counterclockwise)

Preceding gene: 209398797

Following gene: 209396858

Centisome position: 22.28

GC content: 53.1

Gene sequence:

>693_bases
ATGCCACATCACATTGTTATTGTTGAAGATGAGCCGGTTACCCAGGCGCGATTACAATCCTACTTCACTCAGGAGGGGTA
TACCGTTTCCGTTACGGCGAGCGGTGCCGGGCTACGGGAAATTATGCAGAATCAGCCGGTGGATTTAATTCTGCTGGATA
TCAACTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACC
GGACGCAGCGATCGGATTGACCGTATTGTTGGGCTGGAAATGGGCGCAGACGATTACGTCACCAAACCGCTGGAACTGCG
CGAACTGGTAGTACGGGTAAAAAATCTGCTCTGGCGAATCGACCTCGCGCGACAAGCTCAACCGTACACTCAGGACAACT
GCTATCGCTTTGCGGGTTATTGCCTGAATGTGTCGCGCCATACGCTGGAGCGGGATGGTGAGCCGATTAAACTGACCCGC
GCAGAGTATGAAATGTTGGTGGCATTTGTGACCAATCCGGGCGAAATTCTCAGCCGTGAACGTCTGCTGCGTATGCTCTC
TGCGCGTCGGGTGGAAAACCCTGACCTGCGCACCGTCGATGTGTTAATTCGTCGTTTACGCCATAAACTCAGCGCGGATT
TACTGGTGACGCAACATGGCGAAGGTTATTTCTTAGCCGCTGATGTGTGCTGA

Upstream 100 bases:

>100_bases
AAGCGATCTTAATGAGTAAATATGAACAGCGGCACTGGTCAGGATGAACGGCTTACGGCAGAATATGAACAGATATGAAC
AGAATGAGTAAAACCCTCTG

Downstream 100 bases:

>100_bases
TAAAAATAGACCGGACGAAATCCCCCAGGCGACAGCGAGCGGCGGATATGTTCGCGGTCGGCATTTTTCGGCGTCAGAAC
TAAAATCGGTGGGCTGACAT

Product: DNA-binding transcriptional regulator TorR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVT
GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPYTQDNCYRFAGYCLNVSRHTLERDGEPIKLTR
AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

Sequences:

>Translated_230_residues
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVT
GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPYTQDNCYRFAGYCLNVSRHTLERDGEPIKLTR
AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>Mature_229_residues
PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTG
RSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPYTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRA
EYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

Specific function: Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide (TMAO). Phosphorylated torR activates the transcription of the torCAD operon by binding to four decameric boxes located in the torCAD p

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain

Homologues:

Organism=Escherichia coli, GI1787229, Length=230, Percent_Identity=99.1304347826087, Blast_Score=462, Evalue=1e-132,
Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=42.4892703862661, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1789809, Length=232, Percent_Identity=34.051724137931, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1788394, Length=233, Percent_Identity=36.480686695279, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1790860, Length=227, Percent_Identity=34.3612334801762, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1786599, Length=231, Percent_Identity=32.9004329004329, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=32.15859030837, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=29.8245614035088, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786911, Length=227, Percent_Identity=30.3964757709251, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI2367329, Length=231, Percent_Identity=31.6017316017316, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=29.5154185022026, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1789402, Length=223, Percent_Identity=29.1479820627803, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1790552, Length=225, Percent_Identity=30.6666666666667, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI145693140, Length=211, Percent_Identity=29.8578199052133, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TORR_ECO57 (P58357)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   B85635
- PIR:   F90772
- RefSeq:   NP_286931.1
- RefSeq:   NP_309177.1
- ProteinModelPortal:   P58357
- SMR:   P58357
- EnsemblBacteria:   EBESCT00000029112
- EnsemblBacteria:   EBESCT00000055666
- GeneID:   914140
- GeneID:   959058
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z1412
- KEGG:   ecs:ECs1150
- GeneTree:   EBGT00070000031686
- HOGENOM:   HBG753323
- OMA:   YCYRFAG
- ProtClustDB:   PRK10766
- BioCyc:   ECOL83334:ECS1150-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00448
- SMART:   SM00862

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C; SSF52172 CheY_like

EC number: NA

Molecular weight: Translated: 26270; Mature: 26139

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDEN
CCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCEEEEEEEECCCCC
GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI
CCHHHHHHHHCCCEEEEEEECCCCCCHHEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHH
DLARQAQPYTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE
HHHHCCCCCCCCCCEEEEHEEECCHHHHHHCCCCCEEEEHHHEEEEEEEECCCHHHHHHH
RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECC
>Mature Secondary Structure 
PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDEN
CCEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCEEEEEEEECCCCC
GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI
CCHHHHHHHHCCCEEEEEEECCCCCCHHEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHH
DLARQAQPYTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE
HHHHCCCCCCCCCCEEEEHEEECCHHHHHHCCCCCEEEEHHHEEEEEEEECCCHHHHHHH
RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796