Click here to switch to the map view.

The map label for this gene is ydcF [H]

Identifier: 209395974

GI number: 209395974

Start: 1919333

End: 1920133

Strand: Direct

Name: ydcF [H]

Synonym: ECH74115_2020

Alternate gene names: 209395974

Gene position: 1919333-1920133 (Clockwise)

Preceding gene: 209397880

Following gene: 209396361

Centisome position: 34.45

GC content: 50.81

Gene sequence:

>801_bases
ATGAACATTACCCCGTTTCCGACGCTTTCGACGGCAACTATAGATGCCATAAATGTTATCGGACAGTGGCTGGCGCAGGA
TGATTTCTCCGGTGAGGTGCCGTATCAGGCTGATTGCGTCATACTTGCAGGAAATGCGGTTATGCCGACTATCGATGCGG
CATGTAAGATTGCTCGCGATCAGCAAATTCCTTTACTGATTAGTGGTGGTATCGGTCACTCGACCACTTTTTTGTATAGC
GCCATCGCACAGCATCCGCACTACAACACTATCCGCACCACTGGCAGAGCAGAAGCGACCATCCTGGCGGATATCGCTCA
TCAGTTCTGGCATATTCCGCATGAAAAAATCTGGATTGAAGACCAGTCAACAAACTGCGGTGAAAACGCACGCTTTAGCA
TCGCGCTATTGAATCAGGCCGTAGAACGAGTTCACACAGCTATCGTTGTACAGGACCCCACCATGCAGCGGCGCACGATG
GCGACGTTCCGCCGTATGACCGGGGACAATCCCGATGTACCACGCTGGTTAAGTTATCCCGGATTCGTTCCTCAGTTAGG
AAATAACGCAGACAGTGTAATCTTTATTAATCAGTTACAAGGATTATGGCCGGTTGAGCGTTATCTCTCACTACTCACTG
GCGAGCTGCCGCGTTTACGCGATGATAGCGATGGCTACGGTCCCCGCGGGCGAGATTTTATCGTTCACGTTGATTTTCCG
GCAGAAGTCATCCATGCATGGCAAACGCTGAAACACGATGCGGTGCTCATCGAGGCGATGGAAAGTCGCTCGTTACGTTA
A

Upstream 100 bases:

>100_bases
CGCGATGGCGAGATAGAAAAAGCATTATCTTCCTTTCAGAGTGCTCCGCTTCTCACTATTATCTCACGCAGTATTCTTAA
GGGAACGATAAGGAGGAACC

Downstream 100 bases:

>100_bases
AAATTGCCCGTTTGTGAACCACTTGTTTGCAAACGGGCATAACTCCTGCCTTTTATTTCTGCCTCTTATTCCTTTTACAC
TTGTTTTTATGAAGCCCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MNITPFPTLSTATIDAINVIGQWLAQDDFSGEVPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYS
AIAQHPHYNTIRTTGRAEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTM
ATFRRMTGDNPDVPRWLSYPGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPRLRDDSDGYGPRGRDFIVHVDFP
AEVIHAWQTLKHDAVLIEAMESRSLR

Sequences:

>Translated_266_residues
MNITPFPTLSTATIDAINVIGQWLAQDDFSGEVPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYS
AIAQHPHYNTIRTTGRAEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTM
ATFRRMTGDNPDVPRWLSYPGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPRLRDDSDGYGPRGRDFIVHVDFP
AEVIHAWQTLKHDAVLIEAMESRSLR
>Mature_266_residues
MNITPFPTLSTATIDAINVIGQWLAQDDFSGEVPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYS
AIAQHPHYNTIRTTGRAEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTM
ATFRRMTGDNPDVPRWLSYPGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPRLRDDSDGYGPRGRDFIVHVDFP
AEVIHAWQTLKHDAVLIEAMESRSLR

Specific function: Binds S-adenosyl-L-methionine (AdoMet) [H]

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To S.coelicolor SCO4629 [H]

Homologues:

Organism=Escherichia coli, GI1787683, Length=266, Percent_Identity=99.2481203007519, Blast_Score=548, Evalue=1e-157,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 29738; Mature: 29738

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNITPFPTLSTATIDAINVIGQWLAQDDFSGEVPYQADCVILAGNAVMPTIDAACKIARD
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCC
QQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQFWHIPHEKIWIE
CCCCEEEECCCCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEEE
DQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDVPRWLSYP
CCCCCCCCCCEEHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHCCC
GFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPRLRDDSDGYGPRGRDFIVHVDFP
CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCH
AEVIHAWQTLKHDAVLIEAMESRSLR
HHHHHHHHHHCCHHHHEEHHHHCCCC
>Mature Secondary Structure
MNITPFPTLSTATIDAINVIGQWLAQDDFSGEVPYQADCVILAGNAVMPTIDAACKIARD
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCC
QQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQFWHIPHEKIWIE
CCCCEEEECCCCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEEE
DQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDVPRWLSYP
CCCCCCCCCCEEHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHCCC
GFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPRLRDDSDGYGPRGRDFIVHVDFP
CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCH
AEVIHAWQTLKHDAVLIEAMESRSLR
HHHHHHHHHHCCHHHHEEHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10493123 [H]