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The map label for this gene is sodC1 [H]

Identifier: 209395968

GI number: 209395968

Start: 1207569

End: 1208228

Strand: Reverse

Name: sodC1 [H]

Synonym: ECH74115_1200

Alternate gene names: 209395968

Gene position: 1208228-1207569 (Counterclockwise)

Preceding gene: 209400850

Following gene: 209399067

Centisome position: 21.68

GC content: 50.3

Gene sequence:

>660_bases
ATGTTCCTCTCAATTGGTATTATTAATCGCAGTGATAGGATATTGCACAGCTATTGCGCGATATCATCAGAACGCTGTTT
GTTACCCTGTAACCAGCAAGCTCAGTCTGTTAACGGAATTAATGAGGGTTTTATGAAATGTAAAATCATTGCTGCCATTG
CCATGCTGACAGCAGCATCATGCGGATACGCAGCAGAACAGGAAGTCCCAATGAACCTTGTCAGTGCTGACGGAAAAGAA
GTCAGCATTGGAAAAATAACCATTCAGGAGACCCCCTACGGTCTGCTGTTCACACCAGCCCTTCACTCTCTGTCTGAAGG
CATTCATGGTTTTCATGTGCACGAAAAAGGAAATTGCGCCCCGGCACTGAAAGACGGAAAACCGGTCGCAGCATTATCGG
CTGGCGGTCACTTTGACCCGAAAAACACCGGCAAACATCTTGGCCCCTGGTCTCCGGATGGACACCTGGGCGACCTCCCT
GCGCTGTTCGTGACGCATGACGGAAAAGCGAACTACCCGGTCCTGGCCCCGAGACTGAACTCATTAAAAGAGATTAAAGG
GCGTTCTCTCATGCTTCATGCTGGCGGTGATAACCATCATGACCATCCGGAGCCCCTGGGCGGTGGTGGTGCGAGAATGG
CCTGCGGCATCATTCAATAA

Upstream 100 bases:

>100_bases
CCCTTCACCAATGGCATCAATCACGCTCATCATCTGCGTGGACTTAAGATTGTCCTTTGCCTCAACCGGCGTGTGCGCCC
TGCCGCCACCTTTACCCATA

Downstream 100 bases:

>100_bases
TCAGTCAGGTAAGGGGCGGGCCCCTTACCTTTATTCCTCAGGACGATAAATCCTTTCTCCCTGAAAAGAACGGCACATCC
TCCCTCTCTGAGTTAATGTT

Product: putative superoxide dismutase

Products: NA

Alternate protein names: sodCI [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MFLSIGIINRSDRILHSYCAISSERCLLPCNQQAQSVNGINEGFMKCKIIAAIAMLTAASCGYAAEQEVPMNLVSADGKE
VSIGKITIQETPYGLLFTPALHSLSEGIHGFHVHEKGNCAPALKDGKPVAALSAGGHFDPKNTGKHLGPWSPDGHLGDLP
ALFVTHDGKANYPVLAPRLNSLKEIKGRSLMLHAGGDNHHDHPEPLGGGGARMACGIIQ

Sequences:

>Translated_219_residues
MFLSIGIINRSDRILHSYCAISSERCLLPCNQQAQSVNGINEGFMKCKIIAAIAMLTAASCGYAAEQEVPMNLVSADGKE
VSIGKITIQETPYGLLFTPALHSLSEGIHGFHVHEKGNCAPALKDGKPVAALSAGGHFDPKNTGKHLGPWSPDGHLGDLP
ALFVTHDGKANYPVLAPRLNSLKEIKGRSLMLHAGGDNHHDHPEPLGGGGARMACGIIQ
>Mature_219_residues
MFLSIGIINRSDRILHSYCAISSERCLLPCNQQAQSVNGINEGFMKCKIIAAIAMLTAASCGYAAEQEVPMNLVSADGKE
VSIGKITIQETPYGLLFTPALHSLSEGIHGFHVHEKGNCAPALKDGKPVAALSAGGHFDPKNTGKHLGPWSPDGHLGDLP
ALFVTHDGKANYPVLAPRLNSLKEIKGRSLMLHAGGDNHHDHPEPLGGGGARMACGIIQ

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=168, Percent_Identity=59.5238095238095, Blast_Score=195, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23157; Mature: 23157

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLSIGIINRSDRILHSYCAISSERCLLPCNQQAQSVNGINEGFMKCKIIAAIAMLTAAS
CEEEEEEECCCHHHHHHHHHCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHC
CGYAAEQEVPMNLVSADGKEVSIGKITIQETPYGLLFTPALHSLSEGIHGFHVHEKGNCA
CCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCEEEHHHHHHHHCCCCEEEEECCCCCC
PALKDGKPVAALSAGGHFDPKNTGKHLGPWSPDGHLGDLPALFVTHDGKANYPVLAPRLN
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCHH
SLKEIKGRSLMLHAGGDNHHDHPEPLGGGGARMACGIIQ
HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCC
>Mature Secondary Structure
MFLSIGIINRSDRILHSYCAISSERCLLPCNQQAQSVNGINEGFMKCKIIAAIAMLTAAS
CEEEEEEECCCHHHHHHHHHCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHC
CGYAAEQEVPMNLVSADGKEVSIGKITIQETPYGLLFTPALHSLSEGIHGFHVHEKGNCA
CCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCEEEHHHHHHHHCCCCEEEEECCCCCC
PALKDGKPVAALSAGGHFDPKNTGKHLGPWSPDGHLGDLPALFVTHDGKANYPVLAPRLN
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCHH
SLKEIKGRSLMLHAGGDNHHDHPEPLGGGGARMACGIIQ
HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9379906; 9391141; 11677609; 8869506; 10970746 [H]