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The map label for this gene is sufD [H]

Identifier: 20809015

GI number: 20809015

Start: 2569023

End: 2570060

Strand: Reverse

Name: sufD [H]

Synonym: TTE2671

Alternate gene names: 20809015

Gene position: 2570060-2569023 (Counterclockwise)

Preceding gene: 20809016

Following gene: 20809014

Centisome position: 95.56

GC content: 37.38

Gene sequence:

>1038_bases
ATGTTAAAAAGAATACCATGGGAGGAAATACAAAAACCAGCATACAAAGAGTACAATGCTTCTAAGATAAAAGATGTAGA
ACAGGAAGGAATATCTGTAGAGAGAATAGATGCGAATATTTTAAAAAATTTTACGACGGATAAAGCTTATGGGATAGATC
CAAAGCTTACAGAAGAGGTGGAAAAGCATTATAATGCTGGATTTTACATTAAAATTTCCTCTGGCAAAGAAATTAAAAAG
CCAGTGGTCTTTGATTACATTGCAAATTTACAAAATGACCTTTTGCTTGATTACAATGTAATTGAAGTTGAGCCATACTC
TAAAGTTACGGTTGTCTTTGATTACAATTCAGGGGAGAAAGGTTTTAAAAATGGCATAACCAGGTTGATTGCAAAAGAGG
GTTCAACTGTAAATATTGTAAAGATACAGAGATTGGGAGATGACTTTAGCGATTTTGATAACTGCTTGGTAGAGGTTGGG
GAAAAAGCTACAGTCAACTGGTCAAATGTGGTCATAGGAGCTCATATTAGCGCTTTTGACGTATCAGTTTACCTCAGTGA
AGAAGGCGGAAGTTTCACGGCAAAGTCTGTTTTTTTGGGTGTGGACAGTCAGAAGTACGACATGTCTTATAAAGTGTATC
ACTATGCTCCTAAGACTACTAGCAGTGTGGATTTAAAAGGTGCTTTAAAGGGGAGTGCAAAAGCTACTTTTATAGGAAAT
ATTGATATTAAAAAAGGCGCTAAGAAAGCAAAAGCTGAAGAAAATGAGACAGTGCTCTTGCTTGACAAAACTGTCAGGTC
AATTGCTATTCCTGCTCTTTACTGTGCAGAAGAGGATGTACAGGCAAATCACTCTGCCAGTGCAGGTCAGCTGGATGAAA
ACAAGCTCTATTATGTGATGAGCAGAGGTTTTAGCCTTGAAGAAGCAAGACTTCTTATGGTGCAGGCAGTGTTAAATCCT
GTCATAGATTTGATTCCGTATGACCCCATAAGAGAGATAATCTTAAGGGGTCATATAGGGAGGAGGATTATAAAGTAA

Upstream 100 bases:

>100_bases
TAGAGCCCATCGCTAAAGCTCTGCCTTTAGAGTACGCAGTGGAAATGAACAGGTTGATAAAACTTGAGCTGGAAGGTGCA
ATTGGATAGGAGTGAAGCAA

Downstream 100 bases:

>100_bases
TGATGGATGTGAAGAAAATAAGAGAAGATTTTCCGATATTTAATGTAAAGCCTCATGGAAAGAGGCTTGTATACCTTGAT
AATGCTGCTACCACCCAGAA

Product: membrane components of an uncharacterized iron-regulated ABC-type transporter SufB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MLKRIPWEEIQKPAYKEYNASKIKDVEQEGISVERIDANILKNFTTDKAYGIDPKLTEEVEKHYNAGFYIKISSGKEIKK
PVVFDYIANLQNDLLLDYNVIEVEPYSKVTVVFDYNSGEKGFKNGITRLIAKEGSTVNIVKIQRLGDDFSDFDNCLVEVG
EKATVNWSNVVIGAHISAFDVSVYLSEEGGSFTAKSVFLGVDSQKYDMSYKVYHYAPKTTSSVDLKGALKGSAKATFIGN
IDIKKGAKKAKAEENETVLLLDKTVRSIAIPALYCAEEDVQANHSASAGQLDENKLYYVMSRGFSLEEARLLMVQAVLNP
VIDLIPYDPIREIILRGHIGRRIIK

Sequences:

>Translated_345_residues
MLKRIPWEEIQKPAYKEYNASKIKDVEQEGISVERIDANILKNFTTDKAYGIDPKLTEEVEKHYNAGFYIKISSGKEIKK
PVVFDYIANLQNDLLLDYNVIEVEPYSKVTVVFDYNSGEKGFKNGITRLIAKEGSTVNIVKIQRLGDDFSDFDNCLVEVG
EKATVNWSNVVIGAHISAFDVSVYLSEEGGSFTAKSVFLGVDSQKYDMSYKVYHYAPKTTSSVDLKGALKGSAKATFIGN
IDIKKGAKKAKAEENETVLLLDKTVRSIAIPALYCAEEDVQANHSASAGQLDENKLYYVMSRGFSLEEARLLMVQAVLNP
VIDLIPYDPIREIILRGHIGRRIIK
>Mature_345_residues
MLKRIPWEEIQKPAYKEYNASKIKDVEQEGISVERIDANILKNFTTDKAYGIDPKLTEEVEKHYNAGFYIKISSGKEIKK
PVVFDYIANLQNDLLLDYNVIEVEPYSKVTVVFDYNSGEKGFKNGITRLIAKEGSTVNIVKIQRLGDDFSDFDNCLVEVG
EKATVNWSNVVIGAHISAFDVSVYLSEEGGSFTAKSVFLGVDSQKYDMSYKVYHYAPKTTSSVDLKGALKGSAKATFIGN
IDIKKGAKKAKAEENETVLLLDKTVRSIAIPALYCAEEDVQANHSASAGQLDENKLYYVMSRGFSLEEARLLMVQAVLNP
VIDLIPYDPIREIILRGHIGRRIIK

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 38586; Mature: 38586

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRIPWEEIQKPAYKEYNASKIKDVEQEGISVERIDANILKNFTTDKAYGIDPKLTEEV
CCCCCCHHHHCCCHHHCCCCHHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHHHH
EKHYNAGFYIKISSGKEIKKPVVFDYIANLQNDLLLDYNVIEVEPYSKVTVVFDYNSGEK
HHHCCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEECCCCCC
GFKNGITRLIAKEGSTVNIVKIQRLGDDFSDFDNCLVEVGEKATVNWSNVVIGAHISAFD
HHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEECEEEEEEEEEEEE
VSVYLSEEGGSFTAKSVFLGVDSQKYDMSYKVYHYAPKTTSSVDLKGALKGSAKATFIGN
EEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEEC
IDIKKGAKKAKAEENETVLLLDKTVRSIAIPALYCAEEDVQANHSASAGQLDENKLYYVM
CCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCEEECCCHHCCCCCCCCCCCCCCCEEEEE
SRGFSLEEARLLMVQAVLNPVIDLIPYDPIREIILRGHIGRRIIK
ECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCC
>Mature Secondary Structure
MLKRIPWEEIQKPAYKEYNASKIKDVEQEGISVERIDANILKNFTTDKAYGIDPKLTEEV
CCCCCCHHHHCCCHHHCCCCHHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHHHH
EKHYNAGFYIKISSGKEIKKPVVFDYIANLQNDLLLDYNVIEVEPYSKVTVVFDYNSGEK
HHHCCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEECCCCCC
GFKNGITRLIAKEGSTVNIVKIQRLGDDFSDFDNCLVEVGEKATVNWSNVVIGAHISAFD
HHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEECEEEEEEEEEEEE
VSVYLSEEGGSFTAKSVFLGVDSQKYDMSYKVYHYAPKTTSSVDLKGALKGSAKATFIGN
EEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEEC
IDIKKGAKKAKAEENETVLLLDKTVRSIAIPALYCAEEDVQANHSASAGQLDENKLYYVM
CCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCEEECCCHHCCCCCCCCCCCCCCCEEEEE
SRGFSLEEARLLMVQAVLNPVIDLIPYDPIREIILRGHIGRRIIK
ECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]