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The map label for this gene is Cda1.4 [H]

Identifier: 20808948

GI number: 20808948

Start: 2489088

End: 2490038

Strand: Direct

Name: Cda1.4 [H]

Synonym: TTE2603

Alternate gene names: 20808948

Gene position: 2489088-2490038 (Clockwise)

Preceding gene: 20808933

Following gene: 20808949

Centisome position: 92.55

GC content: 36.7

Gene sequence:

>951_bases
GTGGAGAGGTTGAAGAGTATGAGGAAAAGGTTAATTTTTTTTGTAGTAGCAGTTGCATTGGTTTTTGGAGTATCAGTACC
AACAATAGAGCTAAAAACCCAGTCAAACAGGCCTTTTGTACCCGTTTTGATGTACCATCACCTTCAAAAGGAAGGGACTT
TTGATTCAAAAAAATACGGAGGAGTGATAGTTGACCCTGAAAGATTTGAAAAGCAAATGCTTTATTTAAAAGCAGCGGGA
TATCATACTATAACTTTAGAGGAGTTAAGAGATTTTGTGCTTTATAATAAGCCTTTGCCTCCAAAGCCTATTGTAATAAC
TTTTGACGACGGGTACTTGAGTAATTATACTTATGCTTATCCTGTACTTAAAAAGCTGGGTATGAAAGCAGCTATAAACA
TCATAGTAAGTTATGTGCCAGATGAGGTAAATAAACAAAAGCCAAGTGTATCTGTTCCCCATTTTACATGGGAACAGGCG
AAAGAAATGTCAGATAGTGGAGTTATAGAGATTGAAAGCCATACTTATGACCTTCACGGCTACAGATCAAATGGTTTTAA
GAAAATTCCTATGGTGATGGGACCTGTGATAATAAATGGACATCTTGAAACGATGGAAGAATATAGACAAAGGCTTTATA
CAGACTTTTTGCGCTCAAGAAAGATAATTAAAGAAAAGATAGGAAGAGCACCAATATGCCTGACATATCCTTTTGGAGCA
GGAAATAAGATAAGCGATGAAATAGCGAGAAAAGTGGGCTTTGAGATGGCATTTGGAATACAGGAAGGAGTAAATTATTA
CGGGGATAACATAATGAGGCTTAAAAGAATCACTGTTCGGGATTCTGATACAGGCCAGGATATAGTGGAAAAAATTAATA
AATTAAGTTACGGCATAAACTTTGTCCCTTTTCTCGACTTTGTCAGTTGGAGGCCATTTTTAGGCTGGTAA

Upstream 100 bases:

>100_bases
GTTTAGTTAATTTTTCCTTCTTTTTTAGTTTAATTTAATGTTTTTTTAACATTTCTGTAACATATTTGTGATAATCTTGT
GATATATTGGTGATAAATTT

Downstream 100 bases:

>100_bases
AAAATATCAAACCCTTGATTTTCAAGGGTTTTTTGTTTTTAGGGTTAAAAAATTTTTCAAAACTGTAGGGACAATTTTAC
TCCTAATTATTGCCATAATA

Product: xylanase/chitin deacetylase

Products: NA

Alternate protein names: PGA N-deacetylase; Poly-beta-1,6-GlcNAc N-deacetylase [H]

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MERLKSMRKRLIFFVVAVALVFGVSVPTIELKTQSNRPFVPVLMYHHLQKEGTFDSKKYGGVIVDPERFEKQMLYLKAAG
YHTITLEELRDFVLYNKPLPPKPIVITFDDGYLSNYTYAYPVLKKLGMKAAINIIVSYVPDEVNKQKPSVSVPHFTWEQA
KEMSDSGVIEIESHTYDLHGYRSNGFKKIPMVMGPVIINGHLETMEEYRQRLYTDFLRSRKIIKEKIGRAPICLTYPFGA
GNKISDEIARKVGFEMAFGIQEGVNYYGDNIMRLKRITVRDSDTGQDIVEKINKLSYGINFVPFLDFVSWRPFLGW

Sequences:

>Translated_316_residues
MERLKSMRKRLIFFVVAVALVFGVSVPTIELKTQSNRPFVPVLMYHHLQKEGTFDSKKYGGVIVDPERFEKQMLYLKAAG
YHTITLEELRDFVLYNKPLPPKPIVITFDDGYLSNYTYAYPVLKKLGMKAAINIIVSYVPDEVNKQKPSVSVPHFTWEQA
KEMSDSGVIEIESHTYDLHGYRSNGFKKIPMVMGPVIINGHLETMEEYRQRLYTDFLRSRKIIKEKIGRAPICLTYPFGA
GNKISDEIARKVGFEMAFGIQEGVNYYGDNIMRLKRITVRDSDTGQDIVEKINKLSYGINFVPFLDFVSWRPFLGW
>Mature_316_residues
MERLKSMRKRLIFFVVAVALVFGVSVPTIELKTQSNRPFVPVLMYHHLQKEGTFDSKKYGGVIVDPERFEKQMLYLKAAG
YHTITLEELRDFVLYNKPLPPKPIVITFDDGYLSNYTYAYPVLKKLGMKAAINIIVSYVPDEVNKQKPSVSVPHFTWEQA
KEMSDSGVIEIESHTYDLHGYRSNGFKKIPMVMGPVIINGHLETMEEYRQRLYTDFLRSRKIIKEKIGRAPICLTYPFGA
GNKISDEIARKVGFEMAFGIQEGVNYYGDNIMRLKRITVRDSDTGQDIVEKINKLSYGINFVPFLDFVSWRPFLGW

Specific function: Catalyzes the N-deacetylation of poly-beta-1,6-N-acetyl- D-glucosamine (PGA), a biofilm adhesin polysaccharide. N- deacetylation promotes PGA export through the PgaA porin [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor; Periplasmic side [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1787260, Length=260, Percent_Identity=26.1538461538462, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1786322, Length=245, Percent_Identity=30.2040816326531, Blast_Score=108, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 36447; Mature: 36447

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERLKSMRKRLIFFVVAVALVFGVSVPTIELKTQSNRPFVPVLMYHHLQKEGTFDSKKYG
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHCC
GVIVDPERFEKQMLYLKAAGYHTITLEELRDFVLYNKPLPPKPIVITFDDGYLSNYTYAY
CEEECHHHHHHHHHHEEECCCEEEEHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHH
PVLKKLGMKAAINIIVSYVPDEVNKQKPSVSVPHFTWEQAKEMSDSGVIEIESHTYDLHG
HHHHHHCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCEEEECC
YRSNGFKKIPMVMGPVIINGHLETMEEYRQRLYTDFLRSRKIIKEKIGRAPICLTYPFGA
CCCCCCEECCHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
GNKISDEIARKVGFEMAFGIQEGVNYYGDNIMRLKRITVRDSDTGQDIVEKINKLSYGIN
CCCHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCC
FVPFLDFVSWRPFLGW
HHHHHHHHCCCCCCCC
>Mature Secondary Structure
MERLKSMRKRLIFFVVAVALVFGVSVPTIELKTQSNRPFVPVLMYHHLQKEGTFDSKKYG
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHCC
GVIVDPERFEKQMLYLKAAGYHTITLEELRDFVLYNKPLPPKPIVITFDDGYLSNYTYAY
CEEECHHHHHHHHHHEEECCCEEEEHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHH
PVLKKLGMKAAINIIVSYVPDEVNKQKPSVSVPHFTWEQAKEMSDSGVIEIESHTYDLHG
HHHHHHCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCEEEECC
YRSNGFKKIPMVMGPVIINGHLETMEEYRQRLYTDFLRSRKIIKEKIGRAPICLTYPFGA
CCCCCCEECCHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
GNKISDEIARKVGFEMAFGIQEGVNYYGDNIMRLKRITVRDSDTGQDIVEKINKLSYGIN
CCCHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCC
FVPFLDFVSWRPFLGW
HHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]