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The map label for this gene is NagC6 [H]

Identifier: 20808946

GI number: 20808946

Start: 2482757

End: 2483878

Strand: Reverse

Name: NagC6 [H]

Synonym: TTE2597

Alternate gene names: 20808946

Gene position: 2483878-2482757 (Counterclockwise)

Preceding gene: 20808947

Following gene: 20808945

Centisome position: 92.36

GC content: 29.23

Gene sequence:

>1122_bases
ATGGCTTTTAATAGTAAGATATCAAAAGAATTAAATAAAGAATTAATTCTATCCTGTATAAAAAAAGAAGGATTGATTTC
TAAAGTTGAAATTTCAAGAATAACAGGAATTAGCTTGCCATCAGTATCCAAAATAGTAGATGAATTGGTAGAAGAAGGCA
GAATAATAGAATTTGGAGTTGGAGATTCATCAGGTGGTCGAAGACCTGTTTTATATAAGTTTAATGGTAATTTTAGGTAT
TTCGCTGTAATAATTATCAAAAAAGTTTATATGAGTATTTATTTGATAAATTTGGACGGTGATGTTATTGGTGAAGATAA
AATTGCTATAGAAGGTGCTGATGATGACGATGTAGTATTTTCTATAACTAGTGGAATAAGTCGTACATTGAGCAACTATA
ACATTTTCATTGGCAAGCTTTCAAATATTTGCATCGCCGCACCAGGGTATTTTGATTATGAGAAGAACAAATTTTTGATA
AATGGGATACCAGTTATAAAGGCTATTGATTTACATGAAAAATTGAGCAAGAAGTTTCCAAATGTTGAAATTAAATTTGT
AAGTGATATTCATATGACGGCTCTTGGGGAATGGACAAGAATAAAGAATAGATCTGAAAAGAAAAGGATTGTTGTAATAG
ATATTGATAGGGATTTGAGAGAGAATGCCTGTTTTGCAATTATAGATAATGGGAATATTTTGAAACCGGGTAGAGGATAT
TTAGGAAGAATTGAGAAAGATATGATAGATATGGCTGACATTACTGCATTAAAAAAGAATGGATATGAGGAAGTAGGGAA
GTTAATTAATGATGCTAAAGCGAAAAAAGCAAAAGCTATAAATTTATTAACAAACTTATTAGATTTTTTGGCACAAACAA
TAAAACATATACTACATTATGTAGATCCAGATTCCATAATTTTTCATGGTTATATAGCACATCAAAGTTTAATAGAGGCT
GTTAAAGTCAAACTGCAAGAAGAGAATTTAGCGTGTGATATTCAGAAATCTTTACTTAATGAAAAAGCGACATTATATGG
ATGTATAGAAGAAATTCTGTCGAATTTATTTAGTCAGGATGAAAAATTTGGGAAAATTTATAATGTAGATTTTTACAAAT
AA

Upstream 100 bases:

>100_bases
TGAAAATATGGTTTATATAGTGATGCTACTGCAAGATAGGTATAAGAACAAAGAATAAATAACTAAACAAAAGAAAATTA
TATGATAGAAAGGGGTTCCT

Downstream 100 bases:

>100_bases
AGTTATAGATAAGGGTGGTTTTCAGATTTTACCAGTTCATCATTCATTCAGTCCAGAAATGGGGAATGCTTGGGCATTAA
CTCAATGGATGATTATAGGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MAFNSKISKELNKELILSCIKKEGLISKVEISRITGISLPSVSKIVDELVEEGRIIEFGVGDSSGGRRPVLYKFNGNFRY
FAVIIIKKVYMSIYLINLDGDVIGEDKIAIEGADDDDVVFSITSGISRTLSNYNIFIGKLSNICIAAPGYFDYEKNKFLI
NGIPVIKAIDLHEKLSKKFPNVEIKFVSDIHMTALGEWTRIKNRSEKKRIVVIDIDRDLRENACFAIIDNGNILKPGRGY
LGRIEKDMIDMADITALKKNGYEEVGKLINDAKAKKAKAINLLTNLLDFLAQTIKHILHYVDPDSIIFHGYIAHQSLIEA
VKVKLQEENLACDIQKSLLNEKATLYGCIEEILSNLFSQDEKFGKIYNVDFYK

Sequences:

>Translated_373_residues
MAFNSKISKELNKELILSCIKKEGLISKVEISRITGISLPSVSKIVDELVEEGRIIEFGVGDSSGGRRPVLYKFNGNFRY
FAVIIIKKVYMSIYLINLDGDVIGEDKIAIEGADDDDVVFSITSGISRTLSNYNIFIGKLSNICIAAPGYFDYEKNKFLI
NGIPVIKAIDLHEKLSKKFPNVEIKFVSDIHMTALGEWTRIKNRSEKKRIVVIDIDRDLRENACFAIIDNGNILKPGRGY
LGRIEKDMIDMADITALKKNGYEEVGKLINDAKAKKAKAINLLTNLLDFLAQTIKHILHYVDPDSIIFHGYIAHQSLIEA
VKVKLQEENLACDIQKSLLNEKATLYGCIEEILSNLFSQDEKFGKIYNVDFYK
>Mature_372_residues
AFNSKISKELNKELILSCIKKEGLISKVEISRITGISLPSVSKIVDELVEEGRIIEFGVGDSSGGRRPVLYKFNGNFRYF
AVIIIKKVYMSIYLINLDGDVIGEDKIAIEGADDDDVVFSITSGISRTLSNYNIFIGKLSNICIAAPGYFDYEKNKFLIN
GIPVIKAIDLHEKLSKKFPNVEIKFVSDIHMTALGEWTRIKNRSEKKRIVVIDIDRDLRENACFAIIDNGNILKPGRGYL
GRIEKDMIDMADITALKKNGYEEVGKLINDAKAKKAKAINLLTNLLDFLAQTIKHILHYVDPDSIIFHGYIAHQSLIEAV
KVKLQEENLACDIQKSLLNEKATLYGCIEEILSNLFSQDEKFGKIYNVDFYK

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR; PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 42041; Mature: 41910

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFNSKISKELNKELILSCIKKEGLISKVEISRITGISLPSVSKIVDELVEEGRIIEFGV
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCCCCCHHHHHHHHHHHCCCEEEEEC
GDSSGGRRPVLYKFNGNFRYFAVIIIKKVYMSIYLINLDGDVIGEDKIAIEGADDDDVVF
CCCCCCCCCEEEEECCCEEEEHHHHHHHHHHEEEEEEECCCEECCCEEEEECCCCCCEEE
SITSGISRTLSNYNIFIGKLSNICIAAPGYFDYEKNKFLINGIPVIKAIDLHEKLSKKFP
EEHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCCEEEEECCCCEEEECHHHHHHHHCC
NVEIKFVSDIHMTALGEWTRIKNRSEKKRIVVIDIDRDLRENACFAIIDNGNILKPGRGY
CEEEEEECCCHHHHHCHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCEECCCCCH
LGRIEKDMIDMADITALKKNGYEEVGKLINDAKAKKAKAINLLTNLLDFLAQTIKHILHY
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDPDSIIFHGYIAHQSLIEAVKVKLQEENLACDIQKSLLNEKATLYGCIEEILSNLFSQD
CCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
EKFGKIYNVDFYK
HHCCCEEEEEECC
>Mature Secondary Structure 
AFNSKISKELNKELILSCIKKEGLISKVEISRITGISLPSVSKIVDELVEEGRIIEFGV
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCCCCCHHHHHHHHHHHCCCEEEEEC
GDSSGGRRPVLYKFNGNFRYFAVIIIKKVYMSIYLINLDGDVIGEDKIAIEGADDDDVVF
CCCCCCCCCEEEEECCCEEEEHHHHHHHHHHEEEEEEECCCEECCCEEEEECCCCCCEEE
SITSGISRTLSNYNIFIGKLSNICIAAPGYFDYEKNKFLINGIPVIKAIDLHEKLSKKFP
EEHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCCEEEEECCCCEEEECHHHHHHHHCC
NVEIKFVSDIHMTALGEWTRIKNRSEKKRIVVIDIDRDLRENACFAIIDNGNILKPGRGY
CEEEEEECCCHHHHHCHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCEECCCCCH
LGRIEKDMIDMADITALKKNGYEEVGKLINDAKAKKAKAINLLTNLLDFLAQTIKHILHY
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDPDSIIFHGYIAHQSLIEAVKVKLQEENLACDIQKSLLNEKATLYGCIEEILSNLFSQD
CCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
EKFGKIYNVDFYK
HHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8920183 [H]