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The map label for this gene is yndE [H]

Identifier: 20808903

GI number: 20808903

Start: 2442689

End: 2443786

Strand: Reverse

Name: yndE [H]

Synonym: TTE2554

Alternate gene names: 20808903

Gene position: 2443786-2442689 (Counterclockwise)

Preceding gene: 20808904

Following gene: 20808902

Centisome position: 90.87

GC content: 35.97

Gene sequence:

>1098_bases
ATGATAAAAAATAACGACAAAATTTCTTCAAATCAAGTGGCAATCTTGCTCTTTACTACAATGGTTGGAGCAGGGATACT
GAGCCTTCCTGCAGATGTTTCAAAGGAAGTTGGTCCGAATGGACTTTTAGCTATTTTGGGGGGAGGACTTGCTTCTTTAT
TCTTCGCAAGGCTGATACTTTGGATTTCTTCTAAATTTCCTACAGAGACTTTTTCTGAATATGCTTCAAAGCTTGTAACA
AAGCCTGTGGCAGTTGTATTAAGTATAGTCTTGATATTTTACTTAAGTGTCTTTGTGAGCCTCGATGTGAGAATTTTTGG
CGAAGTGCTCAAGATATACTTGCTTCCCAGCACTCCCATTGAGACCATAATAATCACTATGCTTTTTGCTTCTGCGTACC
TTGTGAGGTACGGTCTTGAGCCAATTGCGAGGATGTCAGAGATATTGTTTCCCATTATGGTAATACCTCTTTTGCTCCTC
TTTTTGCCGGCTTTATCTGATGTGGATTTGACCAACTTTCTTCCCTTTATGAGAGTGTCACTTATGAAGTTTTTAAAAGG
AGTTTTTGTAACTACTTATAGTTTTGTAGGTTTTGAGCTTCTTTACATGGTCTTTCCATATGTGATAGATCAAGAGAAAC
TTAAAAAAAGTGTGAATGCCTCTATAATTTCTACAACGCTTTTTTACATGTATATATGCTTTTTTGTCATAGGGATTTTT
GGGTACAAGGAAACGAAAGAACAGCTGTGGCCTTTTTTGACTTTGATTAAATCCATAAACTTTCCAGTGTTTTTCATAGA
AAATGTCGAAGGAATTGTGATGGCAATCTGGACATTTACAATTTTTACTTCTATTTATTCTTTTCATTATTTTGCAGTTT
TGGTTTTATCAAAGCTCATAAAGGCAAGAGAACACTCGTACCTCGTTCTGCCGCTCATCCCTCCCATGTACTTAATGGCG
TTAATTCCTGATTCTATAGTGACTCTCTACAAGTACGCTAATCTTGTATCTCAGTATTTATCTATATTTTTTATATCGTT
TTTGCCTATCATCTTAGCTTTTTTTGTAAAACTTAAAGGGCTGGGTGATAAAAAGTGA

Upstream 100 bases:

>100_bases
AAGGAGAGGCCTGAGATACTGAACACGCCTGATAAAAGAAAAATGGTAGATTTGAGAGAAGAAAAAATAGAAAGCTTGGA
AGAGGACAGGAGAGGGAGAG

Downstream 100 bases:

>100_bases
AGCGCAAAACACTGCTTTTTATTTTACTAATTTTTCTAATTTTTGTTCTAACAGGATGCTGGGACAAAATTGAAATAGAG
GACAGAGCTTTTGTGATGGC

Product: spore germination protein homolog yndE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MIKNNDKISSNQVAILLFTTMVGAGILSLPADVSKEVGPNGLLAILGGGLASLFFARLILWISSKFPTETFSEYASKLVT
KPVAVVLSIVLIFYLSVFVSLDVRIFGEVLKIYLLPSTPIETIIITMLFASAYLVRYGLEPIARMSEILFPIMVIPLLLL
FLPALSDVDLTNFLPFMRVSLMKFLKGVFVTTYSFVGFELLYMVFPYVIDQEKLKKSVNASIISTTLFYMYICFFVIGIF
GYKETKEQLWPFLTLIKSINFPVFFIENVEGIVMAIWTFTIFTSIYSFHYFAVLVLSKLIKAREHSYLVLPLIPPMYLMA
LIPDSIVTLYKYANLVSQYLSIFFISFLPIILAFFVKLKGLGDKK

Sequences:

>Translated_365_residues
MIKNNDKISSNQVAILLFTTMVGAGILSLPADVSKEVGPNGLLAILGGGLASLFFARLILWISSKFPTETFSEYASKLVT
KPVAVVLSIVLIFYLSVFVSLDVRIFGEVLKIYLLPSTPIETIIITMLFASAYLVRYGLEPIARMSEILFPIMVIPLLLL
FLPALSDVDLTNFLPFMRVSLMKFLKGVFVTTYSFVGFELLYMVFPYVIDQEKLKKSVNASIISTTLFYMYICFFVIGIF
GYKETKEQLWPFLTLIKSINFPVFFIENVEGIVMAIWTFTIFTSIYSFHYFAVLVLSKLIKAREHSYLVLPLIPPMYLMA
LIPDSIVTLYKYANLVSQYLSIFFISFLPIILAFFVKLKGLGDKK
>Mature_365_residues
MIKNNDKISSNQVAILLFTTMVGAGILSLPADVSKEVGPNGLLAILGGGLASLFFARLILWISSKFPTETFSEYASKLVT
KPVAVVLSIVLIFYLSVFVSLDVRIFGEVLKIYLLPSTPIETIIITMLFASAYLVRYGLEPIARMSEILFPIMVIPLLLL
FLPALSDVDLTNFLPFMRVSLMKFLKGVFVTTYSFVGFELLYMVFPYVIDQEKLKKSVNASIISTTLFYMYICFFVIGIF
GYKETKEQLWPFLTLIKSINFPVFFIENVEGIVMAIWTFTIFTSIYSFHYFAVLVLSKLIKAREHSYLVLPLIPPMYLMA
LIPDSIVTLYKYANLVSQYLSIFFISFLPIILAFFVKLKGLGDKK

Specific function: Involved in the germinative response to L-alanine. Could be an amino acid transporter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Spore germination protein (SGP) (TC 2.A.3.9) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004761 [H]

Pfam domain/function: PF03845 Spore_permease [H]

EC number: NA

Molecular weight: Translated: 41305; Mature: 41305

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCC
>Mature Secondary Structure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CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]