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The map label for this gene is ydeM [C]

Identifier: 20808722

GI number: 20808722

Start: 2248705

End: 2250132

Strand: Reverse

Name: ydeM [C]

Synonym: TTE2358

Alternate gene names: 20808722

Gene position: 2250132-2248705 (Counterclockwise)

Preceding gene: 20808725

Following gene: 20808721

Centisome position: 83.67

GC content: 25.7

Gene sequence:

>1428_bases
ATGGGAAGAGATTTGTATAAGGATTTTCATTATATACAAAACGAAAAAACAGGTGTTCTTTTTCATAATAAGTCATTAAA
TTACTATAGAGTGTTTGATGAAAACATAAAAAAATATTTTAAAAGTTATTTTATAGACCACGAAACTAGATTTTATAAAG
AAGTTGAAAGTATTTTAGATACTGTAACAAACGAAATAAATAACTCTTATTTAGATAATTATTTTTCACAAGAAAGCTAT
AATGGATATATACTTGAAAAATTAGTTATAATTGTTACGAATAATTGTAATTGTAGATGTAAATATTGTTATGCCAATGG
AGGAAGTTATGGATTAGATGTTAATAACATGAAACGAGATGAAGCAAAAAATATTATTGATTATTTTGTTAAAAATTTTA
GAGTGATTTATAATATACAGATATTTGGTGGAGAACCAATGTTAAATTATGACGTTATCAAGGTTATATGCGAATATTTT
GAAAATTTAAGAAATAATAACATTATAGATTATATGCCGCAGTTTGGGATAGTGACTAATGGAACGTACTTACCATCTGA
AGCTATTGATATAATGAAAAAATTTCGTTTTAACATTACTATTAGCCTGGATGGAGATAAAATAATACATGATAGTTTGA
GAATTAAGAAAACTGGGGAAGGAACTTTTAATTACATTAAAACTAATTATATTAAGATGATAGAAAGTGGAATAAACAAG
GAGAAAATTTCTTTTGAGTGCACCTATACACACAAGCATATTGAAAATAATATAAGTTTTGTTGATTTATTTAAATTTTT
TAGAAACGAGTTTGATTGCTTAATAACCCATATTACGCCTGTTTGTATTGAAAAAAATAACTTTTTATCACTAAATAAAG
ATAAAGAAATAATTAAAAAATACATTAAGGAAGCAGTAGAATATACTTTTGATACTATACTTAAAGAAAGAATTATTAAT
TCTTGTGCAATTATCACAGAAGTAATACAGCGATTAATTAGAAAAATACCTATGCAGTACATTTGCCCAGCAGGAGTTAA
TAATCTCACGGTTACACAAGATGGAACAATATATCCTTGTTTTATGTTCATAGGTACTGACCTATCTGTTGGAAATATAA
ATATTTCATCTGATGAAATTATGAGTAACACAAAAATGTTCAACTTAAAATTTAATGCCAAATTTTTAGATGATTCATGT
AAAACTTGTTGGGCTAAATATATATGTTCTTTTTGTTTAGGGAGTTTTGGGGATATTAAAAATAAAGATAGGTCATATGG
AGCTGAGATAATGTGCATAATGATGAAAGAAATACTAGAGAATGTGTTATTAAAATTAGCAGAGTTAAAAGCTTCAGAAG
AAAATTGGCAGATTTTACATAAGGTTCTGTTTTATCAAGATGAGCAAAATAGAAAGACCTACTCATAA

Upstream 100 bases:

>100_bases
GATATAAAATAAAAATTGTATTATCAATTTTACTACAAGGGATAACTTTCTCTCAATTGAGAGGAAGTTATCCCTTTCCG
GGGAGGAGAAGAGTAAAACA

Downstream 100 bases:

>100_bases
ATATGAATATGATAAAAATAATCGTAGAAGAAAAATAAAATTTTATAATTAGGGAGGGAATAAAGTAATGGAGTATAAAA
GTAATAGAAACATAAAAGGA

Product: Fe-S oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MGRDLYKDFHYIQNEKTGVLFHNKSLNYYRVFDENIKKYFKSYFIDHETRFYKEVESILDTVTNEINNSYLDNYFSQESY
NGYILEKLVIIVTNNCNCRCKYCYANGGSYGLDVNNMKRDEAKNIIDYFVKNFRVIYNIQIFGGEPMLNYDVIKVICEYF
ENLRNNNIIDYMPQFGIVTNGTYLPSEAIDIMKKFRFNITISLDGDKIIHDSLRIKKTGEGTFNYIKTNYIKMIESGINK
EKISFECTYTHKHIENNISFVDLFKFFRNEFDCLITHITPVCIEKNNFLSLNKDKEIIKKYIKEAVEYTFDTILKERIIN
SCAIITEVIQRLIRKIPMQYICPAGVNNLTVTQDGTIYPCFMFIGTDLSVGNINISSDEIMSNTKMFNLKFNAKFLDDSC
KTCWAKYICSFCLGSFGDIKNKDRSYGAEIMCIMMKEILENVLLKLAELKASEENWQILHKVLFYQDEQNRKTYS

Sequences:

>Translated_475_residues
MGRDLYKDFHYIQNEKTGVLFHNKSLNYYRVFDENIKKYFKSYFIDHETRFYKEVESILDTVTNEINNSYLDNYFSQESY
NGYILEKLVIIVTNNCNCRCKYCYANGGSYGLDVNNMKRDEAKNIIDYFVKNFRVIYNIQIFGGEPMLNYDVIKVICEYF
ENLRNNNIIDYMPQFGIVTNGTYLPSEAIDIMKKFRFNITISLDGDKIIHDSLRIKKTGEGTFNYIKTNYIKMIESGINK
EKISFECTYTHKHIENNISFVDLFKFFRNEFDCLITHITPVCIEKNNFLSLNKDKEIIKKYIKEAVEYTFDTILKERIIN
SCAIITEVIQRLIRKIPMQYICPAGVNNLTVTQDGTIYPCFMFIGTDLSVGNINISSDEIMSNTKMFNLKFNAKFLDDSC
KTCWAKYICSFCLGSFGDIKNKDRSYGAEIMCIMMKEILENVLLKLAELKASEENWQILHKVLFYQDEQNRKTYS
>Mature_474_residues
GRDLYKDFHYIQNEKTGVLFHNKSLNYYRVFDENIKKYFKSYFIDHETRFYKEVESILDTVTNEINNSYLDNYFSQESYN
GYILEKLVIIVTNNCNCRCKYCYANGGSYGLDVNNMKRDEAKNIIDYFVKNFRVIYNIQIFGGEPMLNYDVIKVICEYFE
NLRNNNIIDYMPQFGIVTNGTYLPSEAIDIMKKFRFNITISLDGDKIIHDSLRIKKTGEGTFNYIKTNYIKMIESGINKE
KISFECTYTHKHIENNISFVDLFKFFRNEFDCLITHITPVCIEKNNFLSLNKDKEIIKKYIKEAVEYTFDTILKERIINS
CAIITEVIQRLIRKIPMQYICPAGVNNLTVTQDGTIYPCFMFIGTDLSVGNINISSDEIMSNTKMFNLKFNAKFLDDSCK
TCWAKYICSFCLGSFGDIKNKDRSYGAEIMCIMMKEILENVLLKLAELKASEENWQILHKVLFYQDEQNRKTYS

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 55863; Mature: 55732

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRDLYKDFHYIQNEKTGVLFHNKSLNYYRVFDENIKKYFKSYFIDHETRFYKEVESILD
CCCHHHHHHHHHCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TVTNEINNSYLDNYFSQESYNGYILEKLVIIVTNNCNCRCKYCYANGGSYGLDVNNMKRD
HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCHH
EAKNIIDYFVKNFRVIYNIQIFGGEPMLNYDVIKVICEYFENLRNNNIIDYMPQFGIVTN
HHHHHHHHHHHCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEC
GTYLPSEAIDIMKKFRFNITISLDGDKIIHDSLRIKKTGEGTFNYIKTNYIKMIESGINK
CCCCCHHHHHHHHHHEEEEEEEECCCEEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
EKISFECTYTHKHIENNISFVDLFKFFRNEFDCLITHITPVCIEKNNFLSLNKDKEIIKK
CEEEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEECCCCHHHHHH
YIKEAVEYTFDTILKERIINSCAIITEVIQRLIRKIPMQYICPAGVNNLTVTQDGTIYPC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEECCCCEEEE
FMFIGTDLSVGNINISSDEIMSNTKMFNLKFNAKFLDDSCKTCWAKYICSFCLGSFGDIK
EEEECCCCEECEEECCHHHHHCCCEEEEEEECCEECCHHHHHHHHHHHHHHHHCCCCCCC
NKDRSYGAEIMCIMMKEILENVLLKLAELKASEENWQILHKVLFYQDEQNRKTYS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GRDLYKDFHYIQNEKTGVLFHNKSLNYYRVFDENIKKYFKSYFIDHETRFYKEVESILD
CCHHHHHHHHHCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TVTNEINNSYLDNYFSQESYNGYILEKLVIIVTNNCNCRCKYCYANGGSYGLDVNNMKRD
HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCHH
EAKNIIDYFVKNFRVIYNIQIFGGEPMLNYDVIKVICEYFENLRNNNIIDYMPQFGIVTN
HHHHHHHHHHHCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEC
GTYLPSEAIDIMKKFRFNITISLDGDKIIHDSLRIKKTGEGTFNYIKTNYIKMIESGINK
CCCCCHHHHHHHHHHEEEEEEEECCCEEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
EKISFECTYTHKHIENNISFVDLFKFFRNEFDCLITHITPVCIEKNNFLSLNKDKEIIKK
CEEEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEECCCCHHHHHH
YIKEAVEYTFDTILKERIINSCAIITEVIQRLIRKIPMQYICPAGVNNLTVTQDGTIYPC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEECCCCEEEE
FMFIGTDLSVGNINISSDEIMSNTKMFNLKFNAKFLDDSCKTCWAKYICSFCLGSFGDIK
EEEECCCCEECEEECCHHHHHCCCEEEEEEECCEECCHHHHHHHHHHHHHHHHCCCCCCC
NKDRSYGAEIMCIMMKEILENVLLKLAELKASEENWQILHKVLFYQDEQNRKTYS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]