Click here to switch to the map view.

The map label for this gene is Cda1.3

Identifier: 20808409

GI number: 20808409

Start: 1955361

End: 1956242

Strand: Reverse

Name: Cda1.3

Synonym: TTE2006

Alternate gene names: NA

Gene position: 1956242-1955361 (Counterclockwise)

Preceding gene: 20808410

Following gene: 20808408

Centisome position: 72.74

GC content: 39.8

Gene sequence:

>882_bases
ATGGCAAAGAAAATTATCTCTTTGGCAATAGGAGTTGCCCTCTGTTTTTCACTTGTGTCCTGTGGTATAATCAAAAAAAA
CAGCAATGAAAATGATAAGGCAAAAATTCAAGAGGAAGCTCTACATGAGCCGTTTAACTCGCCTAAAGAAGAGATTTCAA
ACGTTGTAAATCATGTGGTTCAAAAGACAGAAAATCTTGACAACACTCCTTATGGATGGGGCTTAAGAGTTTTGCCCAAT
CACCAAACGCCGGAGATTACGCCTTATGCCATGGAACTTGTCAAAAAGTACAATGCGATTTTTGTTGGAGATACGACGAA
AAAAGTGGTGTACTTGACTTTTGATGAAGGATATGAAGCAGGATATACTCCTCGGATATTGGATGTACTCAAAGAAAACG
GAGTAAAGGCAGCTTTTTTTGTTACAGGACCTTATGTTAAACAGCAGGCGGACCTTGTGAAGAGAATGGTAGAGGAAGGA
CACATTGTTGGAAATCACACAGTCAACCATCCCAGTCTTCCTACCTTGCCTGATGAAAAAGTGAAAGAGGAGATACTTGG
ATTGGAAAAGATGTTTGAAGATTTAACGGGGCAAAAGATGAAATACTTCAGACCTCCAAGAGGAGAATACAGTGAAAGAA
CGCTCTATATTACTAAATCTTTGGGATACAGAACGGTTTTCTGGAGTTTGGCTATGGCTGACTGGCAGCCTCTTCCTGGA
GGACCTGAAGAAAGCTATAGTACTGTTATGAAAAGGCTTCACCCTGGAGCTGTTATACTTCTGCACGCTGTTTCAAAAGA
TAATGCACAGGCACTTGACAGGATAATTAAAAGCATCAAAGAGGAAGGATATGAATTTAAGACATTAGATGATATTCCGT
AA

Upstream 100 bases:

>100_bases
GCGAGATATACGAGGGCAATTCCAGATAAATACAGAATATTGAAGGGCTTAAAAGAAAAAAATAAAGATGTAAATTAGGA
AGAGAAATGGGGTAGAAAAA

Downstream 100 bases:

>100_bases
AAGAGGGGAATTGCTTTGGATGCGATTTTAGAAAAAAAGAACTTGTACATTTTGGGATTGGCTATTGGAATCAGCTTGAT
ATCAATTGTATTGGTTTTGA

Product: xylanase/chitin deacetylase

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MAKKIISLAIGVALCFSLVSCGIIKKNSNENDKAKIQEEALHEPFNSPKEEISNVVNHVVQKTENLDNTPYGWGLRVLPN
HQTPEITPYAMELVKKYNAIFVGDTTKKVVYLTFDEGYEAGYTPRILDVLKENGVKAAFFVTGPYVKQQADLVKRMVEEG
HIVGNHTVNHPSLPTLPDEKVKEEILGLEKMFEDLTGQKMKYFRPPRGEYSERTLYITKSLGYRTVFWSLAMADWQPLPG
GPEESYSTVMKRLHPGAVILLHAVSKDNAQALDRIIKSIKEEGYEFKTLDDIP

Sequences:

>Translated_293_residues
MAKKIISLAIGVALCFSLVSCGIIKKNSNENDKAKIQEEALHEPFNSPKEEISNVVNHVVQKTENLDNTPYGWGLRVLPN
HQTPEITPYAMELVKKYNAIFVGDTTKKVVYLTFDEGYEAGYTPRILDVLKENGVKAAFFVTGPYVKQQADLVKRMVEEG
HIVGNHTVNHPSLPTLPDEKVKEEILGLEKMFEDLTGQKMKYFRPPRGEYSERTLYITKSLGYRTVFWSLAMADWQPLPG
GPEESYSTVMKRLHPGAVILLHAVSKDNAQALDRIIKSIKEEGYEFKTLDDIP
>Mature_292_residues
AKKIISLAIGVALCFSLVSCGIIKKNSNENDKAKIQEEALHEPFNSPKEEISNVVNHVVQKTENLDNTPYGWGLRVLPNH
QTPEITPYAMELVKKYNAIFVGDTTKKVVYLTFDEGYEAGYTPRILDVLKENGVKAAFFVTGPYVKQQADLVKRMVEEGH
IVGNHTVNHPSLPTLPDEKVKEEILGLEKMFEDLTGQKMKYFRPPRGEYSERTLYITKSLGYRTVFWSLAMADWQPLPGG
PEESYSTVMKRLHPGAVILLHAVSKDNAQALDRIIKSIKEEGYEFKTLDDIP

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=126, Percent_Identity=35.7142857142857, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6323338, Length=142, Percent_Identity=32.3943661971831, Blast_Score=76, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014235 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33070; Mature: 32939

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKIISLAIGVALCFSLVSCGIIKKNSNENDKAKIQEEALHEPFNSPKEEISNVVNHVV
CCHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QKTENLDNTPYGWGLRVLPNHQTPEITPYAMELVKKYNAIFVGDTTKKVVYLTFDEGYEA
HHHHCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCEEEEECCCCEEEEEEECCCCCC
GYTPRILDVLKENGVKAAFFVTGPYVKQQADLVKRMVEEGHIVGNHTVNHPSLPTLPDEK
CCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHH
VKEEILGLEKMFEDLTGQKMKYFRPPRGEYSERTLYITKSLGYRTVFWSLAMADWQPLPG
HHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCC
GPEESYSTVMKRLHPGAVILLHAVSKDNAQALDRIIKSIKEEGYEFKTLDDIP
CCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AKKIISLAIGVALCFSLVSCGIIKKNSNENDKAKIQEEALHEPFNSPKEEISNVVNHVV
CHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QKTENLDNTPYGWGLRVLPNHQTPEITPYAMELVKKYNAIFVGDTTKKVVYLTFDEGYEA
HHHHCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCEEEEECCCCEEEEEEECCCCCC
GYTPRILDVLKENGVKAAFFVTGPYVKQQADLVKRMVEEGHIVGNHTVNHPSLPTLPDEK
CCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHH
VKEEILGLEKMFEDLTGQKMKYFRPPRGEYSERTLYITKSLGYRTVFWSLAMADWQPLPG
HHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCC
GPEESYSTVMKRLHPGAVILLHAVSKDNAQALDRIIKSIKEEGYEFKTLDDIP
CCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8473853 [H]