Click here to switch to the map view.

The map label for this gene is NrdD [H]

Identifier: 20808264

GI number: 20808264

Start: 1796689

End: 1798767

Strand: Reverse

Name: NrdD [H]

Synonym: TTE1850

Alternate gene names: 20808264

Gene position: 1798767-1796689 (Counterclockwise)

Preceding gene: 20808265

Following gene: 20808263

Centisome position: 66.88

GC content: 41.61

Gene sequence:

>2079_bases
ATGGAAATTGAGATGAAGGTGATTAAAAGAGACGGGCGAGAGGTGAAATTTGATAAGACAAAAATCTCAAATGCGATTTA
TAAGGCTTTTAAAGCTGTGGGAGAAGGGGAATACGAAGAGGCATTAGAAATCGCTGATGAAGTGACAAAGCACGTAGAAC
AGGTTTTTGAGGGGATAGCCAGTGTTGAGCAAATTCAGGATGTGGTGGAAGTATTTTTAATAAAAAGGGGATATGCTAAA
GCTGCAAAAGCTTATATTCTTTACAGAAAACAACACCAAGATATAAGAGAGTTTAAAAAGATGGTCATGGATATTGAGAA
AATGGTAGATGAGTACCTGGGAAAGCAGGATTGGAGAGTAAATGAGAATAGCAATATGAGCTATTCACTGCAAGGGCTCA
ATAACCATATATCGAGCAGCATTACTGCTCACTACTGGCTGAATAAAATATACCCTCCAGAGGTGAGAGATGCGCATATA
AGCGGGGATTTACATATTCACGATTTGGGACTTTTATCTGTTTACTGCTGCGGCTGGGATTTAAGGGATTTGCTTTTGAA
CGGGTTTACAGGAGTGGAAGGAAAGGTTCAGAGCAAACCGCCAAAGCACTTCAGGTCAGCCCTTGGGCAGATTGTCAACT
TTTTCTATACGCTTCAAGGAGAAGCAGCAGGGGCCCAGGCTTTTTCCAATTTTGATACATACCTTGCTCCCTTTGTTTAC
TATGACAATTTGTCTTACAGGGAAGTCAAACAGGCCATGCAGGAATTTATATTCAACCTGAATGTCCCAACAAGGGTGGG
CTTTCAGACACCTTTTACGAATATAACCATGGATTTGGTTGTGCCCGAGATTATGGCAGATGAGCCTGTAATAATAGGCG
GAAAGATTATGGACAGGACCTACAAGGAATTTCAAAAAGAGATGGACATGATAAATATGGCTTTTGCAGTGGTGATGATG
GAGGGGGACGCGAAAGGGAGGATATTCACATTCCCCATACCCACTTATAACATAACTAAAAATTTTGACTGGGACAGCCC
TGTTGTAAACAAAGTGATGGAGATGACAGCAAAATACGGCCTTCCTTATTTCAGCAATTTTGTAAATAGCGACCTAGACC
CAAATGATGTCAGGTCAATGTGCTGTAGACTTAGATTGGACAACAGGGAGTTGAGGAGAAGGGGAGGAGGGCTTTTTGGA
GCAAATCCCTTGACAGGGTCAATAGGTGTTGTGACGATAAATATGCCCAGGATTGGATATCTGTCCAGGACGAAAGAGGA
GTTTTTCCAGAGGTTAGAAAGACTTATGGACATTGCAAAGACCAGCCTTGAGATAAAGAGGGAAGTACTTGAGAAGATGA
CAGAAATGGGGCTTTATCCTTATTCCAAGTTTTACCTTAGAGATGTGAAAAAGAGGTTTGGGTATTACTGGCAGAATCAT
TTCAACACCATAGGGCTTATTGGTATGAATGAAGCCTTGCTCAATTTCATGGGAGTGAGCATTGCCACGGAAGAGGGGAG
AAAATTTGCACTTGAGGTCTTAGACTTTATGAGGCATAAGTTAGAACAGTATCAACTGGAATCCAGTTTTATGTACAACC
TGGAGGCAACTCCTGCAGAAGGAGCCTCTTACAGATTGGCCAAAAAAGATAAAGAGCTTTTCCCAGATATAATTACTGCA
GGAGATGATGTTCCGTACTATACCAATTCTACTCAACTGCCAGTGGATTTTACAGAGGATATATTTACTGCGCTTGATTT
GCAAGAGGAATTGCAGACTAAGTACACTGGAGGGACTGTATTTCACGGTTTTATAGGGGAAGCCATTAGCGATGTGGAAA
CTTGCAAGGCATTGGTAAGGAAAATCGCCTATAATTACAGGATTCCCTACTACACAATAACTCCTACTTTTTCCATATGC
GAAGACCACGGGTACATTTCAGGCGAGCATTTTGAATGTCCCTACTGCGGTAGAGAATGTGAGGTTTACAGCCGCGTAGT
GGGATACTATAGGCCTATTAAAAACTGGAATGAAGGGAAGAGAAAAGAATTTGAGCAAAGGAAGGAATTTGTGGTATGA

Upstream 100 bases:

>100_bases
GGTGACCATGATATACTAAATATTGAGGCATTAAATTAAGATACTACTATATTTTGTGTCATATTGAGAGTTTTTTAAAC
AAAAGAATGGAGGGTTACGT

Downstream 100 bases:

>100_bases
TGTACGATTTTTTGCCGGTTTCTTTTGTAGATTTTCCTGGGAAAATTGCAGCCACTGTGTTTGTGAGTGGCTGCAATTTT
AAATGTCCATACTGCCATAA

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 692; Mature: 692

Protein sequence:

>692_residues
MEIEMKVIKRDGREVKFDKTKISNAIYKAFKAVGEGEYEEALEIADEVTKHVEQVFEGIASVEQIQDVVEVFLIKRGYAK
AAKAYILYRKQHQDIREFKKMVMDIEKMVDEYLGKQDWRVNENSNMSYSLQGLNNHISSSITAHYWLNKIYPPEVRDAHI
SGDLHIHDLGLLSVYCCGWDLRDLLLNGFTGVEGKVQSKPPKHFRSALGQIVNFFYTLQGEAAGAQAFSNFDTYLAPFVY
YDNLSYREVKQAMQEFIFNLNVPTRVGFQTPFTNITMDLVVPEIMADEPVIIGGKIMDRTYKEFQKEMDMINMAFAVVMM
EGDAKGRIFTFPIPTYNITKNFDWDSPVVNKVMEMTAKYGLPYFSNFVNSDLDPNDVRSMCCRLRLDNRELRRRGGGLFG
ANPLTGSIGVVTINMPRIGYLSRTKEEFFQRLERLMDIAKTSLEIKREVLEKMTEMGLYPYSKFYLRDVKKRFGYYWQNH
FNTIGLIGMNEALLNFMGVSIATEEGRKFALEVLDFMRHKLEQYQLESSFMYNLEATPAEGASYRLAKKDKELFPDIITA
GDDVPYYTNSTQLPVDFTEDIFTALDLQEELQTKYTGGTVFHGFIGEAISDVETCKALVRKIAYNYRIPYYTITPTFSIC
EDHGYISGEHFECPYCGRECEVYSRVVGYYRPIKNWNEGKRKEFEQRKEFVV

Sequences:

>Translated_692_residues
MEIEMKVIKRDGREVKFDKTKISNAIYKAFKAVGEGEYEEALEIADEVTKHVEQVFEGIASVEQIQDVVEVFLIKRGYAK
AAKAYILYRKQHQDIREFKKMVMDIEKMVDEYLGKQDWRVNENSNMSYSLQGLNNHISSSITAHYWLNKIYPPEVRDAHI
SGDLHIHDLGLLSVYCCGWDLRDLLLNGFTGVEGKVQSKPPKHFRSALGQIVNFFYTLQGEAAGAQAFSNFDTYLAPFVY
YDNLSYREVKQAMQEFIFNLNVPTRVGFQTPFTNITMDLVVPEIMADEPVIIGGKIMDRTYKEFQKEMDMINMAFAVVMM
EGDAKGRIFTFPIPTYNITKNFDWDSPVVNKVMEMTAKYGLPYFSNFVNSDLDPNDVRSMCCRLRLDNRELRRRGGGLFG
ANPLTGSIGVVTINMPRIGYLSRTKEEFFQRLERLMDIAKTSLEIKREVLEKMTEMGLYPYSKFYLRDVKKRFGYYWQNH
FNTIGLIGMNEALLNFMGVSIATEEGRKFALEVLDFMRHKLEQYQLESSFMYNLEATPAEGASYRLAKKDKELFPDIITA
GDDVPYYTNSTQLPVDFTEDIFTALDLQEELQTKYTGGTVFHGFIGEAISDVETCKALVRKIAYNYRIPYYTITPTFSIC
EDHGYISGEHFECPYCGRECEVYSRVVGYYRPIKNWNEGKRKEFEQRKEFVV
>Mature_692_residues
MEIEMKVIKRDGREVKFDKTKISNAIYKAFKAVGEGEYEEALEIADEVTKHVEQVFEGIASVEQIQDVVEVFLIKRGYAK
AAKAYILYRKQHQDIREFKKMVMDIEKMVDEYLGKQDWRVNENSNMSYSLQGLNNHISSSITAHYWLNKIYPPEVRDAHI
SGDLHIHDLGLLSVYCCGWDLRDLLLNGFTGVEGKVQSKPPKHFRSALGQIVNFFYTLQGEAAGAQAFSNFDTYLAPFVY
YDNLSYREVKQAMQEFIFNLNVPTRVGFQTPFTNITMDLVVPEIMADEPVIIGGKIMDRTYKEFQKEMDMINMAFAVVMM
EGDAKGRIFTFPIPTYNITKNFDWDSPVVNKVMEMTAKYGLPYFSNFVNSDLDPNDVRSMCCRLRLDNRELRRRGGGLFG
ANPLTGSIGVVTINMPRIGYLSRTKEEFFQRLERLMDIAKTSLEIKREVLEKMTEMGLYPYSKFYLRDVKKRFGYYWQNH
FNTIGLIGMNEALLNFMGVSIATEEGRKFALEVLDFMRHKLEQYQLESSFMYNLEATPAEGASYRLAKKDKELFPDIITA
GDDVPYYTNSTQLPVDFTEDIFTALDLQEELQTKYTGGTVFHGFIGEAISDVETCKALVRKIAYNYRIPYYTITPTFSIC
EDHGYISGEHFECPYCGRECEVYSRVVGYYRPIKNWNEGKRKEFEQRKEFVV

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=744, Percent_Identity=24.0591397849462, Blast_Score=139, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 80087; Mature: 80087

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS51161 ATP_CONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIEMKVIKRDGREVKFDKTKISNAIYKAFKAVGEGEYEEALEIADEVTKHVEQVFEGIA
CCCCHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
SVEQIQDVVEVFLIKRGYAKAAKAYILYRKQHQDIREFKKMVMDIEKMVDEYLGKQDWRV
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
NENSNMSYSLQGLNNHISSSITAHYWLNKIYPPEVRDAHISGDLHIHDLGLLSVYCCGWD
CCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCC
LRDLLLNGFTGVEGKVQSKPPKHFRSALGQIVNFFYTLQGEAAGAQAFSNFDTYLAPFVY
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHCCCE
YDNLSYREVKQAMQEFIFNLNVPTRVGFQTPFTNITMDLVVPEIMADEPVIIGGKIMDRT
ECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCEEECCHHHHHH
YKEFQKEMDMINMAFAVVMMEGDAKGRIFTFPIPTYNITKNFDWDSPVVNKVMEMTAKYG
HHHHHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHC
LPYFSNFVNSDLDPNDVRSMCCRLRLDNRELRRRGGGLFGANPLTGSIGVVTINMPRIGY
CHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCH
LSRTKEEFFQRLERLMDIAKTSLEIKREVLEKMTEMGLYPYSKFYLRDVKKRFGYYWQNH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHC
FNTIGLIGMNEALLNFMGVSIATEEGRKFALEVLDFMRHKLEQYQLESSFMYNLEATPAE
CCEEEEEECHHHHHHHHCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
GASYRLAKKDKELFPDIITAGDDVPYYTNSTQLPVDFTEDIFTALDLQEELQTKYTGGTV
CCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
FHGFIGEAISDVETCKALVRKIAYNYRIPYYTITPTFSICEDHGYISGEHFECPYCGREC
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCCCHH
EVYSRVVGYYRPIKNWNEGKRKEFEQRKEFVV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MEIEMKVIKRDGREVKFDKTKISNAIYKAFKAVGEGEYEEALEIADEVTKHVEQVFEGIA
CCCCHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
SVEQIQDVVEVFLIKRGYAKAAKAYILYRKQHQDIREFKKMVMDIEKMVDEYLGKQDWRV
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
NENSNMSYSLQGLNNHISSSITAHYWLNKIYPPEVRDAHISGDLHIHDLGLLSVYCCGWD
CCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCC
LRDLLLNGFTGVEGKVQSKPPKHFRSALGQIVNFFYTLQGEAAGAQAFSNFDTYLAPFVY
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHCCCE
YDNLSYREVKQAMQEFIFNLNVPTRVGFQTPFTNITMDLVVPEIMADEPVIIGGKIMDRT
ECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCEEECCHHHHHH
YKEFQKEMDMINMAFAVVMMEGDAKGRIFTFPIPTYNITKNFDWDSPVVNKVMEMTAKYG
HHHHHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHC
LPYFSNFVNSDLDPNDVRSMCCRLRLDNRELRRRGGGLFGANPLTGSIGVVTINMPRIGY
CHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCH
LSRTKEEFFQRLERLMDIAKTSLEIKREVLEKMTEMGLYPYSKFYLRDVKKRFGYYWQNH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHC
FNTIGLIGMNEALLNFMGVSIATEEGRKFALEVLDFMRHKLEQYQLESSFMYNLEATPAE
CCEEEEEECHHHHHHHHCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
GASYRLAKKDKELFPDIITAGDDVPYYTNSTQLPVDFTEDIFTALDLQEELQTKYTGGTV
CCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
FHGFIGEAISDVETCKALVRKIAYNYRIPYYTITPTFSICEDHGYISGEHFECPYCGREC
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCCCHH
EVYSRVVGYYRPIKNWNEGKRKEFEQRKEFVV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]