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The map label for this gene is rarA [H]

Identifier: 20808203

GI number: 20808203

Start: 1731507

End: 1732829

Strand: Reverse

Name: rarA [H]

Synonym: TTE1784

Alternate gene names: 20808203

Gene position: 1732829-1731507 (Counterclockwise)

Preceding gene: 20808204

Following gene: 20808201

Centisome position: 64.43

GC content: 40.21

Gene sequence:

>1323_bases
ATGTATAAGCAAACTTCTATATTTGATGCCAAGTTTGATAAAAACAGGCCTCTAGCAGATAGAATGAGGCCAAGGACCTT
AGATGAGTTTGTTGGACAGGAGCATATTTTGGGAAAGGGTAAAGCTCTAAGAGAACTGATAGAAAAGGACAGCATAACTT
CTATGATACTTTGGGGTCCACCTGGCGTTGGCAAAACCACTCTTGCTATGATTATAGCCAATATGACAAATTCTAAATTT
GTCAATTTTAGCGCTGTACTTTCTGGAATAAAAGAAATAAAAGAGATAATGGCCCAAGCTGAAAGAGATGCTATGTACGG
GCAGAGAACTGTTGTGTTTATAGATGAAATTCACAGATTTAACAAAGCGCAACAGGATGCTTTTTTGCCTCATGTAGAAA
AAGGAAATATAATACTGATTGGAGCTACTACAGAAAATCCGTCTTTTGAAGTAAATTCAGCTCTTTTGTCCAGGTCTAAA
GTTTTTATGATGAAGCCCTTGGATGTTAAGGATATAATGATTATTCTAAAAAGGGCGCTAAAAGATGAGGAGAGAGGCCT
TGGGCTTTACAATGTAGAAATCGACGAAGAAAAACTTGAAAAAATTGCTCTTTTTTCTAATGGGGATGCGAGGGTAGCCC
TTAATACTTTGGAGATGGCTGTAATGGCAGCTAATGTCGTGAACGGGAAAAGAGTTGTAACAGATGAAATACTCTCTGAT
GTGATGCAGAAAAAAGCGCTTCTTTACGACAAGGCAGGAGAAGAGCATTATAATTTGATTTCAGCCTTTCATAAGTCATT
GAGGAATAGCGATTGGGATGCTGCCCTTTATTGGATGGCAAGGATGTTGGAAGCAGGGGAGGACCCCCTCTATATCGCGA
GGAGGATGATAAGATTTGCTTCAGAAGATGTAGGGCTAGCAGATCCACAAGCTCTTTCTGTAGCTATTGCTGCCTATGAA
GCTTCTCACTACATAGGCATGCCAGAGTGCAGTGTAAATCTTGCTCAAGCAGCTGTATATCTCGCTTTGGCTCCCAAGTC
CAATGCCCTTTATGTAGCTTACAACAGGGTGAAAAAAGATGCAGAAGAGACTTTTGCCGAGCCGGTTCCCATGCATTTGA
GAAATGCCCCTACAAAGTTGATGAAGGAATTGGGGTATGGAGAGGGTTACAAATACGCCCATGACTTTGAAGAGAAAGTC
ACTGATATGGAATGCCTGCCCGAAAATCTTAAGGGTCGAAGATATTACATTCCCACGGATTCAGGTTTTGAGAAAAAGTT
AAAAGAGAGAATGGAAGAGATTTTAAAATTGAAAGGGAAATAA

Upstream 100 bases:

>100_bases
AGAATTTTTAGAAGACGATTTTATTAAGATAACAATAAAATTTAAATTAAAGGAAAAGAGGAGAAAAAAGCATAAAAATA
AGGCTTAGCGGTGATGAACC

Downstream 100 bases:

>100_bases
AAGCGGCATTTCGCTTGAATTGCAAAATGCCGCTTTTTAGGGTCTACACTTTTTCTTCTTTAGGGTCTTCAAATATGATT
ATGCCAGGTACAAAGAGGAG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MYKQTSIFDAKFDKNRPLADRMRPRTLDEFVGQEHILGKGKALRELIEKDSITSMILWGPPGVGKTTLAMIIANMTNSKF
VNFSAVLSGIKEIKEIMAQAERDAMYGQRTVVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSK
VFMMKPLDVKDIMIILKRALKDEERGLGLYNVEIDEEKLEKIALFSNGDARVALNTLEMAVMAANVVNGKRVVTDEILSD
VMQKKALLYDKAGEEHYNLISAFHKSLRNSDWDAALYWMARMLEAGEDPLYIARRMIRFASEDVGLADPQALSVAIAAYE
ASHYIGMPECSVNLAQAAVYLALAPKSNALYVAYNRVKKDAEETFAEPVPMHLRNAPTKLMKELGYGEGYKYAHDFEEKV
TDMECLPENLKGRRYYIPTDSGFEKKLKERMEEILKLKGK

Sequences:

>Translated_440_residues
MYKQTSIFDAKFDKNRPLADRMRPRTLDEFVGQEHILGKGKALRELIEKDSITSMILWGPPGVGKTTLAMIIANMTNSKF
VNFSAVLSGIKEIKEIMAQAERDAMYGQRTVVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSK
VFMMKPLDVKDIMIILKRALKDEERGLGLYNVEIDEEKLEKIALFSNGDARVALNTLEMAVMAANVVNGKRVVTDEILSD
VMQKKALLYDKAGEEHYNLISAFHKSLRNSDWDAALYWMARMLEAGEDPLYIARRMIRFASEDVGLADPQALSVAIAAYE
ASHYIGMPECSVNLAQAAVYLALAPKSNALYVAYNRVKKDAEETFAEPVPMHLRNAPTKLMKELGYGEGYKYAHDFEEKV
TDMECLPENLKGRRYYIPTDSGFEKKLKERMEEILKLKGK
>Mature_440_residues
MYKQTSIFDAKFDKNRPLADRMRPRTLDEFVGQEHILGKGKALRELIEKDSITSMILWGPPGVGKTTLAMIIANMTNSKF
VNFSAVLSGIKEIKEIMAQAERDAMYGQRTVVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSK
VFMMKPLDVKDIMIILKRALKDEERGLGLYNVEIDEEKLEKIALFSNGDARVALNTLEMAVMAANVVNGKRVVTDEILSD
VMQKKALLYDKAGEEHYNLISAFHKSLRNSDWDAALYWMARMLEAGEDPLYIARRMIRFASEDVGLADPQALSVAIAAYE
ASHYIGMPECSVNLAQAAVYLALAPKSNALYVAYNRVKKDAEETFAEPVPMHLRNAPTKLMKELGYGEGYKYAHDFEEKV
TDMECLPENLKGRRYYIPTDSGFEKKLKERMEEILKLKGK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=445, Percent_Identity=48.7640449438202, Blast_Score=422, Evalue=1e-118,
Organism=Homo sapiens, GI18426904, Length=445, Percent_Identity=44.2696629213483, Blast_Score=365, Evalue=1e-101,
Organism=Homo sapiens, GI6677723, Length=238, Percent_Identity=26.890756302521, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787119, Length=418, Percent_Identity=51.9138755980861, Blast_Score=434, Evalue=1e-123,
Organism=Escherichia coli, GI1788167, Length=133, Percent_Identity=33.8345864661654, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17541988, Length=287, Percent_Identity=26.1324041811847, Blast_Score=65, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=425, Percent_Identity=44.4705882352941, Blast_Score=340, Evalue=3e-94,
Organism=Saccharomyces cerevisiae, GI6324039, Length=282, Percent_Identity=25.177304964539, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49725; Mature: 49725

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKQTSIFDAKFDKNRPLADRMRPRTLDEFVGQEHILGKGKALRELIEKDSITSMILWGP
CCCCCCCCCCCCCCCCCHHHHCCCCCHHHHCCCHHHCCCCHHHHHHHHHCCCCEEEEECC
PGVGKTTLAMIIANMTNSKFVNFSAVLSGIKEIKEIMAQAERDAMYGQRTVVFIDEIHRF
CCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHH
NKAQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSKVFMMKPLDVKDIMIILKRAL
CHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
KDEERGLGLYNVEIDEEKLEKIALFSNGDARVALNTLEMAVMAANVVNGKRVVTDEILSD
HHHHHCCCEEEEEECHHHHHHHHEECCCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHH
VMQKKALLYDKAGEEHYNLISAFHKSLRNSDWDAALYWMARMLEAGEDPLYIARRMIRFA
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SEDVGLADPQALSVAIAAYEASHYIGMPECSVNLAQAAVYLALAPKSNALYVAYNRVKKD
CCCCCCCCCHHHHHHHEEEHHHCCCCCCCCHHHHHHHEEEEEECCCCCEEEEEHHHHHHH
AEETFAEPVPMHLRNAPTKLMKELGYGEGYKYAHDFEEKVTDMECLPENLKGRRYYIPTD
HHHHHCCCCCHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCC
SGFEKKLKERMEEILKLKGK
CCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYKQTSIFDAKFDKNRPLADRMRPRTLDEFVGQEHILGKGKALRELIEKDSITSMILWGP
CCCCCCCCCCCCCCCCCHHHHCCCCCHHHHCCCHHHCCCCHHHHHHHHHCCCCEEEEECC
PGVGKTTLAMIIANMTNSKFVNFSAVLSGIKEIKEIMAQAERDAMYGQRTVVFIDEIHRF
CCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHH
NKAQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSKVFMMKPLDVKDIMIILKRAL
CHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
KDEERGLGLYNVEIDEEKLEKIALFSNGDARVALNTLEMAVMAANVVNGKRVVTDEILSD
HHHHHCCCEEEEEECHHHHHHHHEECCCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHH
VMQKKALLYDKAGEEHYNLISAFHKSLRNSDWDAALYWMARMLEAGEDPLYIARRMIRFA
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SEDVGLADPQALSVAIAAYEASHYIGMPECSVNLAQAAVYLALAPKSNALYVAYNRVKKD
CCCCCCCCCHHHHHHHEEEHHHCCCCCCCCHHHHHHHEEEEEECCCCCEEEEEHHHHHHH
AEETFAEPVPMHLRNAPTKLMKELGYGEGYKYAHDFEEKVTDMECLPENLKGRRYYIPTD
HHHHHCCCCCHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCC
SGFEKKLKERMEEILKLKGK
CCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]