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The map label for this gene is CspC [H]

Identifier: 20808157

GI number: 20808157

Start: 1684038

End: 1684238

Strand: Reverse

Name: CspC [H]

Synonym: TTE1738

Alternate gene names: 20808157

Gene position: 1684238-1684038 (Counterclockwise)

Preceding gene: 20808158

Following gene: 20808156

Centisome position: 62.62

GC content: 45.77

Gene sequence:

>201_bases
ATGGTAAGAGGTAAAGTTAAATGGTTTAATGCCGAGAAAGGCTATGGTTTTATTGAGAGAGAGGATGGCACAGACGTATT
TGTGCACTACTCCGCGATTGAAGGCGAGGGCTTTAAGACGTTAGAGGAAGGACAGGCGGTAGAATTTGAGGTAGTTCAGG
CGGCTAAAGGCCCACAGGCTTCTAAGGTAAGAAAGCTGTAA

Upstream 100 bases:

>100_bases
ATCTTGACACTATCAAAAAGTTGAAAAAAAGTTTGACTTTTTGAAGTTTTGGTGTTATGATAAATAGGTAAATCATTTAT
TAGTTTGGAGGAAGATGTAA

Downstream 100 bases:

>100_bases
CTGCCGAATTTTAAACCCTAACATGTATATGTTAGGGTTTTTTGATATATAAAAGGTGGAGGTTTACAAAATGGGTGACT
ATATCGTAAAAGCGACTGCT

Product: cold shock proteins

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MVRGKVKWFNAEKGYGFIEREDGTDVFVHYSAIEGEGFKTLEEGQAVEFEVVQAAKGPQASKVRKL

Sequences:

>Translated_66_residues
MVRGKVKWFNAEKGYGFIEREDGTDVFVHYSAIEGEGFKTLEEGQAVEFEVVQAAKGPQASKVRKL
>Mature_66_residues
MVRGKVKWFNAEKGYGFIEREDGTDVFVHYSAIEGEGFKTLEEGQAVEFEVVQAAKGPQASKVRKL

Specific function: Affects cell viability at low temperatures [H]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=62.1212121212121, Blast_Score=87, Evalue=3e-19,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=59.0909090909091, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=56.0606060606061, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=53.030303030303, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=55.5555555555556, Blast_Score=75, Evalue=7e-16,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=56.0606060606061, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=51.5625, Blast_Score=69, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7393; Mature: 7393

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRGKVKWFNAEKGYGFIEREDGTDVFVHYSAIEGEGFKTLEEGQAVEFEVVQAAKGPQA
CCCCCEEEEECCCCCCEEEECCCCEEEEEEEEECCCCCEECCCCCEEEEEEEECCCCCCC
SKVRKL
CCCCCC
>Mature Secondary Structure
MVRGKVKWFNAEKGYGFIEREDGTDVFVHYSAIEGEGFKTLEEGQAVEFEVVQAAKGPQA
CCCCCEEEEECCCCCCEEEECCCCEEEEEEEEECCCCCEECCCCCEEEEEEEECCCCCCC
SKVRKL
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294017; 10736231 [H]