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The map label for this gene is CitB [H]

Identifier: 20808107

GI number: 20808107

Start: 1630110

End: 1630736

Strand: Reverse

Name: CitB [H]

Synonym: TTE1681

Alternate gene names: 20808107

Gene position: 1630736-1630110 (Counterclockwise)

Preceding gene: 20808108

Following gene: 20808106

Centisome position: 60.63

GC content: 38.28

Gene sequence:

>627_bases
ATGATTCGGTTGCTAGTGGCTGATGACCACGCTCTCATAAGAAAAGGACTTGTCCAGCTGATAGAACTTGAGAAGGATAT
AAGAGTGATATCCCAAGCTTCAAATGGTGAGGAAGCTTACAGGCTTGCTAAAGAACTTTCTCCTGACATAATTTTGATGG
ACATAAATATGCCTGTAATGAATGGCATAACAGCAGCGAAAAAATTGAAGGCAGAAAAACATCCCAGCAAAATACTGTTT
TTGACTATTTACAATGACAAAGAATACTTGGTTGAGGCTTTGAAGTTAGGAGTGGAAGGTTACATATTAAAGGATGCTGA
GTATGATGACCTTATAAAGGCTGTCCGCACAATTTACAATGGTGGAGTGTACATTCATCCTTCTCTCATGCAAGAGATAG
AGGATTCGAATGAGGAATTATTAAGAAAAGAACTTACTCCCCGCGAGATAGAAATACTCAAGTTGCTCTCTCAAGGATAC
AGCAATAAAGAGATCGCACAGAAACTATTTTTAAGCGAAAAAACTGTGAAAAATCACGTCTACAATATTTTCCGCAAACT
GGGTGTCAAGGACAGAACGCAGGCTGCAATTTATATGCTCAAAAATCAGACGATTTTACAGAGTTAA

Upstream 100 bases:

>100_bases
AGGGAGAGGGTGGAAATTTTGAATGGAAAGTTTGAGATAAGCAGTTTCAAAGGCAAAGGGACTCAAATTTACATTTCCAT
TCCTGTAAGGGGTGTTGAGG

Downstream 100 bases:

>100_bases
TCCTTTACAAGGCTAAATTTGACTTTTATTCAAAAAGGGAATAATATTATAGATGGATGTTTCAATATTAAAAGCAGCGG
GGGGTAATGTAATTGGAAGA

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MIRLLVADDHALIRKGLVQLIELEKDIRVISQASNGEEAYRLAKELSPDIILMDINMPVMNGITAAKKLKAEKHPSKILF
LTIYNDKEYLVEALKLGVEGYILKDAEYDDLIKAVRTIYNGGVYIHPSLMQEIEDSNEELLRKELTPREIEILKLLSQGY
SNKEIAQKLFLSEKTVKNHVYNIFRKLGVKDRTQAAIYMLKNQTILQS

Sequences:

>Translated_208_residues
MIRLLVADDHALIRKGLVQLIELEKDIRVISQASNGEEAYRLAKELSPDIILMDINMPVMNGITAAKKLKAEKHPSKILF
LTIYNDKEYLVEALKLGVEGYILKDAEYDDLIKAVRTIYNGGVYIHPSLMQEIEDSNEELLRKELTPREIEILKLLSQGY
SNKEIAQKLFLSEKTVKNHVYNIFRKLGVKDRTQAAIYMLKNQTILQS
>Mature_208_residues
MIRLLVADDHALIRKGLVQLIELEKDIRVISQASNGEEAYRLAKELSPDIILMDINMPVMNGITAAKKLKAEKHPSKILF
LTIYNDKEYLVEALKLGVEGYILKDAEYDDLIKAVRTIYNGGVYIHPSLMQEIEDSNEELLRKELTPREIEILKLLSQGY
SNKEIAQKLFLSEKTVKNHVYNIFRKLGVKDRTQAAIYMLKNQTILQS

Specific function: Member of the two-component regulatory system yfiJ/yfiK [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787473, Length=202, Percent_Identity=40.5940594059406, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1788521, Length=206, Percent_Identity=34.4660194174757, Blast_Score=127, Evalue=4e-31,
Organism=Escherichia coli, GI1788222, Length=194, Percent_Identity=32.4742268041237, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1790102, Length=202, Percent_Identity=31.1881188118812, Blast_Score=110, Evalue=5e-26,
Organism=Escherichia coli, GI1786747, Length=189, Percent_Identity=30.1587301587302, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1788712, Length=187, Percent_Identity=26.2032085561497, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1788546, Length=194, Percent_Identity=28.3505154639175, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788550, Length=109, Percent_Identity=33.9449541284404, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1787277, Length=58, Percent_Identity=56.8965517241379, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1789937, Length=123, Percent_Identity=32.520325203252, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082052, Length=104, Percent_Identity=32.6923076923077, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23844; Mature: 23844

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLLVADDHALIRKGLVQLIELEKDIRVISQASNGEEAYRLAKELSPDIILMDINMPVM
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCHHH
NGITAAKKLKAEKHPSKILFLTIYNDKEYLVEALKLGVEGYILKDAEYDDLIKAVRTIYN
HHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHC
GGVYIHPSLMQEIEDSNEELLRKELTPREIEILKLLSQGYSNKEIAQKLFLSEKTVKNHV
CCEEECHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
YNIFRKLGVKDRTQAAIYMLKNQTILQS
HHHHHHCCCCCCHHHHHHHCCCCHHHCC
>Mature Secondary Structure
MIRLLVADDHALIRKGLVQLIELEKDIRVISQASNGEEAYRLAKELSPDIILMDINMPVM
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCHHH
NGITAAKKLKAEKHPSKILFLTIYNDKEYLVEALKLGVEGYILKDAEYDDLIKAVRTIYN
HHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHC
GGVYIHPSLMQEIEDSNEELLRKELTPREIEILKLLSQGYSNKEIAQKLFLSEKTVKNHV
CCEEECHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
YNIFRKLGVKDRTQAAIYMLKNQTILQS
HHHHHHCCCCCCHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]