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The map label for this gene is ykwD [H]

Identifier: 20808105

GI number: 20808105

Start: 1627955

End: 1628596

Strand: Direct

Name: ykwD [H]

Synonym: TTE1679

Alternate gene names: 20808105

Gene position: 1627955-1628596 (Clockwise)

Preceding gene: 20808104

Following gene: 20808145

Centisome position: 60.53

GC content: 32.24

Gene sequence:

>642_bases
ATGAAAACAAAATCAACAATAGCACTAGTTTTAGCAGCAATTTCACTTTTTTCTTTTAATTCTGCTGACGCTTCAATCTT
TTACTCTTATGGCTATTTTTCAAAAAACAATTTAATAAGACCTTCTGCTCTTATAACAGTAAGACAGCCTGTCTCCTTAA
ACAAAAAAATAGCTTCATACACACCTTCCTCCAGTATCATAAATAGTAATACAGCGAATCCAAGTAACACTTCACAAATT
CAAACAAGTGCAGTACTTTCACAGGAGGAAAAAACTTTAGTAGAACTGGTGAATAAAGAAAGAAAAAAAAACAACCTCTT
GCCATTACAGGTAGATGAAAATCTGTGCAAAGTTGCTAGACTAAAAGCTGAAGACATGCGGGACAACGACTACTTTTCTC
ACATTTCTCCAAATTACGGCTCTCCTTTTGACATGCTCAAAAAATTTGGAATAAATTATTATATGGCAGGTGAAAACATA
GCAGTAAATTCTAACGTGATAAAAGCTCACTATTCTTTGATGAATTCAGAAGGGCACAGGGCGAATATATTAAATCCTTA
TTACAATAAAATTGGAGTCGGAATAGTAAAAAATAAACAAGGAAATGGAATAATAGTAGTGGAACTTTTTATAAAAGATT
AA

Upstream 100 bases:

>100_bases
CTTAAAAAAATCCTACAGTATCTTGACACTATCCATGTCCATAAATTACTTGAAGGAATTTACAGCTTTCTGTAGAATAT
ATTGATTTGAGGTGGTGTAC

Downstream 100 bases:

>100_bases
TCCGGGAACTTCCCGGATTAATCTTTTTCCATGAAAACTTTATAGGCTTTGTAAGCCATGTACACATCCACTTTGGAAGA
CAATTCATAAGGCGCGTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKTKSTIALVLAAISLFSFNSADASIFYSYGYFSKNNLIRPSALITVRQPVSLNKKIASYTPSSSIINSNTANPSNTSQI
QTSAVLSQEEKTLVELVNKERKKNNLLPLQVDENLCKVARLKAEDMRDNDYFSHISPNYGSPFDMLKKFGINYYMAGENI
AVNSNVIKAHYSLMNSEGHRANILNPYYNKIGVGIVKNKQGNGIIVVELFIKD

Sequences:

>Translated_213_residues
MKTKSTIALVLAAISLFSFNSADASIFYSYGYFSKNNLIRPSALITVRQPVSLNKKIASYTPSSSIINSNTANPSNTSQI
QTSAVLSQEEKTLVELVNKERKKNNLLPLQVDENLCKVARLKAEDMRDNDYFSHISPNYGSPFDMLKKFGINYYMAGENI
AVNSNVIKAHYSLMNSEGHRANILNPYYNKIGVGIVKNKQGNGIIVVELFIKD
>Mature_213_residues
MKTKSTIALVLAAISLFSFNSADASIFYSYGYFSKNNLIRPSALITVRQPVSLNKKIASYTPSSSIINSNTANPSNTSQI
QTSAVLSQEEKTLVELVNKERKKNNLLPLQVDENLCKVARLKAEDMRDNDYFSHISPNYGSPFDMLKKFGINYYMAGENI
AVNSNVIKAHYSLMNSEGHRANILNPYYNKIGVGIVKNKQGNGIIVVELFIKD

Specific function: Unknown

COG id: COG2340

COG function: function code S; Uncharacterized protein with SCP/PR1 domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SCP domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014044
- InterPro:   IPR014258 [H]

Pfam domain/function: PF00188 SCP [H]

EC number: NA

Molecular weight: Translated: 23710; Mature: 23710

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKSTIALVLAAISLFSFNSADASIFYSYGYFSKNNLIRPSALITVRQPVSLNKKIASY
CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECEECCCCCCCCCEEEEEECCCCCCCHHHCC
TPSSSIINSNTANPSNTSQIQTSAVLSQEEKTLVELVNKERKKNNLLPLQVDENLCKVAR
CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHH
LKAEDMRDNDYFSHISPNYGSPFDMLKKFGINYYMAGENIAVNSNVIKAHYSLMNSEGHR
HHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCEEECCCHHHHHHHHHCCCCCE
ANILNPYYNKIGVGIVKNKQGNGIIVVELFIKD
ECCCCHHHHHHCCEEEECCCCCCEEEEEEEECC
>Mature Secondary Structure
MKTKSTIALVLAAISLFSFNSADASIFYSYGYFSKNNLIRPSALITVRQPVSLNKKIASY
CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECEECCCCCCCCCEEEEEECCCCCCCHHHCC
TPSSSIINSNTANPSNTSQIQTSAVLSQEEKTLVELVNKERKKNNLLPLQVDENLCKVAR
CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHH
LKAEDMRDNDYFSHISPNYGSPFDMLKKFGINYYMAGENIAVNSNVIKAHYSLMNSEGHR
HHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCEEECCCHHHHHHHHHCCCCCE
ANILNPYYNKIGVGIVKNKQGNGIIVVELFIKD
ECCCCHHHHHHCCEEEECCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]