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The map label for this gene is TdcF [H]

Identifier: 20808032

GI number: 20808032

Start: 1559627

End: 1560004

Strand: Reverse

Name: TdcF [H]

Synonym: TTE1603

Alternate gene names: 20808032

Gene position: 1560004-1559627 (Counterclockwise)

Preceding gene: 20808033

Following gene: 20808031

Centisome position: 58.0

GC content: 39.15

Gene sequence:

>378_bases
ATGAAGACAATTATAAACACTGATGCTGCTCCAAAGGCTATAGGACCCTATTCACAGGCAGTTTTAGTAGATGGATTTTT
ATACACCGCAGGACAAATAGCTATTGACCCTGCCACAGGAGAAATGGTAGAGGCTGACATTGAAAAGCAGACAGAAAGAG
TTTTGGAAAATATACGGGCCATCTTAAGAGCTGCAGGTATGGATTTTAACAACGTTATAAAGACCACTGTATTTGTCACA
AATATGGCTGACTTTGCAAAGATTAATGAAATTTACGGAAGGTATTTTAAAGACAATCCTCCGGCCCGTTCACTGGTCGA
AGTAAAAAGTCTGCCAAAAGGTGCTTTAATAGAGATAGAGGTAGTTGCTCATAAGTAA

Upstream 100 bases:

>100_bases
TATAATCCTTAAAAAATTATTGAAAAAGCGCAAGTTTAAGTGATATAATATTCATGGACAACGTTTTATGTGGGAAAATA
AATAGAAGGGATGGGGATAG

Downstream 100 bases:

>100_bases
GAAACTGTTTTTCTGTCTTTTTAAACTGCTATTAAACGATTACAGGCTGGGGATAAAAATTTTAGGAGGGATTTCTGTGT
ACGATGATTTGACGAGAATG

Product: putative translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKTIINTDAAPKAIGPYSQAVLVDGFLYTAGQIAIDPATGEMVEADIEKQTERVLENIRAILRAAGMDFNNVIKTTVFVT
NMADFAKINEIYGRYFKDNPPARSLVEVKSLPKGALIEIEVVAHK

Sequences:

>Translated_125_residues
MKTIINTDAAPKAIGPYSQAVLVDGFLYTAGQIAIDPATGEMVEADIEKQTERVLENIRAILRAAGMDFNNVIKTTVFVT
NMADFAKINEIYGRYFKDNPPARSLVEVKSLPKGALIEIEVVAHK
>Mature_125_residues
MKTIINTDAAPKAIGPYSQAVLVDGFLYTAGQIAIDPATGEMVEADIEKQTERVLENIRAILRAAGMDFNNVIKTTVFVT
NMADFAKINEIYGRYFKDNPPARSLVEVKSLPKGALIEIEVVAHK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=51.219512195122, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=46.8253968253968, Blast_Score=117, Evalue=3e-28,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=46.031746031746, Blast_Score=109, Evalue=6e-26,
Organism=Escherichia coli, GI1787245, Length=123, Percent_Identity=31.7073170731707, Blast_Score=81, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=50.8196721311475, Blast_Score=132, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=50.8196721311475, Blast_Score=132, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=50.8196721311475, Blast_Score=132, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=37.1900826446281, Blast_Score=94, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=101, Percent_Identity=34.6534653465347, Blast_Score=79, Evalue=2e-16,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=39.8373983739837, Blast_Score=102, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13697; Mature: 13697

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIINTDAAPKAIGPYSQAVLVDGFLYTAGQIAIDPATGEMVEADIEKQTERVLENIRA
CCCEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
ILRAAGMDFNNVIKTTVFVTNMADFAKINEIYGRYFKDNPPARSLVEVKSLPKGALIEIE
HHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEE
VVAHK
EEECC
>Mature Secondary Structure
MKTIINTDAAPKAIGPYSQAVLVDGFLYTAGQIAIDPATGEMVEADIEKQTERVLENIRA
CCCEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
ILRAAGMDFNNVIKTTVFVTNMADFAKINEIYGRYFKDNPPARSLVEVKSLPKGALIEIE
HHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEE
VVAHK
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA