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The map label for this gene is yggS [C]

Identifier: 20808029

GI number: 20808029

Start: 1556210

End: 1556803

Strand: Reverse

Name: yggS [C]

Synonym: TTE1600

Alternate gene names: 20808029

Gene position: 1556803-1556210 (Counterclockwise)

Preceding gene: 20808030

Following gene: 20808028

Centisome position: 57.89

GC content: 39.06

Gene sequence:

>594_bases
GTGGCAGCTACAAAAACTTTTGGGGTAGATGCTATTAAAGAGGCCATTTCCTGCGGAATTACTGCTATTGGCGAAAATAG
AGTGCAGGAGCTTATGGAGAAATATCCGCATCTTAAAGGGCAGGTGGATTTTCACTTTATAGGTCATCTTCAGACAAATA
AGGTGAAATACATTATAGACAAGGTGAAGCTTGTTCATTCGCTGGACAGAGAAAAACTGGCGGAAGAAATTGATAAAAGG
GCGAAACAAAAGGGGATTATAATGGATTGTCTCATTGAGGTAAACATAGGAGGTGAAGATACTAAATTTGGCATTTCGCC
GGAGGAGATGCATAACTTAGTGAAAAAATTGGAAAAATATGATAATATAAAGATAAAAGGACTTATGACGATTGCTCCTT
ATCTTCCTCCAGAAGAAGTGAGGCCATATTTTAAAAGGATGAGAGAACTTTTTGAGGATTTAAAAAGAATTAATCAGAGG
AATGTAGAAGCTCAGTATCTCTCAATGGGGATGTCGAATGACTACTGGGTGGCAGTGGAAGAGGGAGCTAACATAGTCAG
GATTGGCACCGCCATTTTTGGAGAAAGACGATAA

Upstream 100 bases:

>100_bases
GGGATTAAAAACGAGCATCTGTGAAAATGTAAAAAGAATAAAAGAAACCATTGCGGAACATGCGCTAAAAGTTGGAAGAG
ACCCTCAAGAGATACTGATT

Downstream 100 bases:

>100_bases
AAGCGGAGGGGTTAAAATGTCTTCGAAGGTAATAGATAAGATAATGAGTTTTTTGGGAATTGAAGAAGAGGAGGAGGAAA
TTCAAACTCCTCAGCCTGTG

Product: TIM-barrel fold family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MAATKTFGVDAIKEAISCGITAIGENRVQELMEKYPHLKGQVDFHFIGHLQTNKVKYIIDKVKLVHSLDREKLAEEIDKR
AKQKGIIMDCLIEVNIGGEDTKFGISPEEMHNLVKKLEKYDNIKIKGLMTIAPYLPPEEVRPYFKRMRELFEDLKRINQR
NVEAQYLSMGMSNDYWVAVEEGANIVRIGTAIFGERR

Sequences:

>Translated_197_residues
MAATKTFGVDAIKEAISCGITAIGENRVQELMEKYPHLKGQVDFHFIGHLQTNKVKYIIDKVKLVHSLDREKLAEEIDKR
AKQKGIIMDCLIEVNIGGEDTKFGISPEEMHNLVKKLEKYDNIKIKGLMTIAPYLPPEEVRPYFKRMRELFEDLKRINQR
NVEAQYLSMGMSNDYWVAVEEGANIVRIGTAIFGERR
>Mature_196_residues
AATKTFGVDAIKEAISCGITAIGENRVQELMEKYPHLKGQVDFHFIGHLQTNKVKYIIDKVKLVHSLDREKLAEEIDKRA
KQKGIIMDCLIEVNIGGEDTKFGISPEEMHNLVKKLEKYDNIKIKGLMTIAPYLPPEEVRPYFKRMRELFEDLKRINQRN
VEAQYLSMGMSNDYWVAVEEGANIVRIGTAIFGERR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=208, Percent_Identity=34.1346153846154, Blast_Score=105, Evalue=3e-23,
Organism=Escherichia coli, GI1789321, Length=200, Percent_Identity=34, Blast_Score=114, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17533025, Length=207, Percent_Identity=32.8502415458937, Blast_Score=96, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6319435, Length=186, Percent_Identity=34.9462365591398, Blast_Score=89, Evalue=5e-19,
Organism=Drosophila melanogaster, GI45550861, Length=210, Percent_Identity=31.9047619047619, Blast_Score=101, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 22643; Mature: 22511

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATKTFGVDAIKEAISCGITAIGENRVQELMEKYPHLKGQVDFHFIGHLQTNKVKYIID
CCCCCCCCHHHHHHHHHCCCHHCCHHHHHHHHHHCCCCCCCEEEEEEECEECCHHHHHHH
KVKLVHSLDREKLAEEIDKRAKQKGIIMDCLIEVNIGGEDTKFGISPEEMHNLVKKLEKY
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
DNIKIKGLMTIAPYLPPEEVRPYFKRMRELFEDLKRINQRNVEAQYLSMGMSNDYWVAVE
CCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEC
EGANIVRIGTAIFGERR
CCCCEEEEHHHHHCCCC
>Mature Secondary Structure 
AATKTFGVDAIKEAISCGITAIGENRVQELMEKYPHLKGQVDFHFIGHLQTNKVKYIID
CCCCCCCHHHHHHHHHCCCHHCCHHHHHHHHHHCCCCCCCEEEEEEECEECCHHHHHHH
KVKLVHSLDREKLAEEIDKRAKQKGIIMDCLIEVNIGGEDTKFGISPEEMHNLVKKLEKY
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
DNIKIKGLMTIAPYLPPEEVRPYFKRMRELFEDLKRINQRNVEAQYLSMGMSNDYWVAVE
CCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEC
EGANIVRIGTAIFGERR
CCCCEEEEHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]