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The map label for this gene is RpoE4

Identifier: 20807989

GI number: 20807989

Start: 1518720

End: 1519169

Strand: Direct

Name: RpoE4

Synonym: TTE1559

Alternate gene names: NA

Gene position: 1518720-1519169 (Clockwise)

Preceding gene: 20807988

Following gene: 20807990

Centisome position: 56.47

GC content: 34.89

Gene sequence:

>450_bases
GTGACTCAATTATATAATGGCTTTTCTTGTACTATAAGGGAACTTTTTATCAATTTTCCCCTCTTATATAGTAGAGGGAG
CTCCCAAAGAAGAGGTGACAACACATTGGATATACCAGATGTTATTAAAAAAGTACAAAAAGGCGATTTTGAAGCTTTTG
AATATCTCATAAAATTTGAGGGCCCAAAAGCATTGAAAACCGCATATCTTATCACAGGCGAAAAACATATAGCGGAAGAA
TGTGTGCAAGAAGCGTTCCTTCAGTGTTACCAGAAAATTTACCAGCTTAAAAACCCTCAAGTATTTGAAAGCTGGTTTTA
TAGGATTTTAACTAGGATATGCTGGGGTACTATCTCAAAAAACAAAAACAATGTTTCATTGGAAGCTTTGAAAGAAGCAG
GACAAGACTTTTACTCAGAAAAGGACAATACAGAAGAAATTGAGGGATAA

Upstream 100 bases:

>100_bases
CGCATACCTGCGAAAGTTAATATAACAAAAATCAAAAGTCCTGCTACAAAGGGAAAAAGGCGATTGTTCTATTATATCAC
CGCCTGTTTTCCCTTTTCTA

Downstream 100 bases:

>100_bases
AAATGGCAGAACCAATAAAAATAAAGACTTTCCCTGCCTTCCTGCCTGGAAAACATTCTTAGTCTTTCCGGGCAGGTTAT
TTTTATTCTCCTATGGAACA

Product: DNA-directed RNA polymerase specialized sigma subunits, sigma24 homologs

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor SigW; DNA-Directed RNA Polymeracialized Sigma Subunits; RNA Polymerase; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MTQLYNGFSCTIRELFINFPLLYSRGSSQRRGDNTLDIPDVIKKVQKGDFEAFEYLIKFEGPKALKTAYLITGEKHIAEE
CVQEAFLQCYQKIYQLKNPQVFESWFYRILTRICWGTISKNKNNVSLEALKEAGQDFYSEKDNTEEIEG

Sequences:

>Translated_149_residues
MTQLYNGFSCTIRELFINFPLLYSRGSSQRRGDNTLDIPDVIKKVQKGDFEAFEYLIKFEGPKALKTAYLITGEKHIAEE
CVQEAFLQCYQKIYQLKNPQVFESWFYRILTRICWGTISKNKNNVSLEALKEAGQDFYSEKDNTEEIEG
>Mature_148_residues
TQLYNGFSCTIRELFINFPLLYSRGSSQRRGDNTLDIPDVIKKVQKGDFEAFEYLIKFEGPKALKTAYLITGEKHIAEEC
VQEAFLQCYQKIYQLKNPQVFESWFYRILTRICWGTISKNKNNVSLEALKEAGQDFYSEKDNTEEIEG

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17375; Mature: 17244

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLYNGFSCTIRELFINFPLLYSRGSSQRRGDNTLDIPDVIKKVQKGDFEAFEYLIKFE
CCCCCCCHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCC
GPKALKTAYLITGEKHIAEECVQEAFLQCYQKIYQLKNPQVFESWFYRILTRICWGTISK
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
NKNNVSLEALKEAGQDFYSEKDNTEEIEG
CCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TQLYNGFSCTIRELFINFPLLYSRGSSQRRGDNTLDIPDVIKKVQKGDFEAFEYLIKFE
CCCCCCHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCC
GPKALKTAYLITGEKHIAEECVQEAFLQCYQKIYQLKNPQVFESWFYRILTRICWGTISK
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
NKNNVSLEALKEAGQDFYSEKDNTEEIEG
CCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA