Click here to switch to the map view.

The map label for this gene is Sun [H]

Identifier: 20807946

GI number: 20807946

Start: 1468804

End: 1470135

Strand: Reverse

Name: Sun [H]

Synonym: TTE1503

Alternate gene names: 20807946

Gene position: 1470135-1468804 (Counterclockwise)

Preceding gene: 20807947

Following gene: 20807945

Centisome position: 54.66

GC content: 36.86

Gene sequence:

>1332_bases
ATGAATGCTAGGGAATTGGCTTACAGAATACTCTACGACGTAGTAGTGAAAAAAGCTTATATAAACATCTCTTTTGCCAA
ACATTTAAGGAATGATGAGGTAAAAGAGGTTGATGCTGCTTTTGTCAAAGAACTGGTTTACGGGGTTATTGAGAGAAAGT
ACACCCTGGATTTTATACTTTCTTTTTTTATAAAGAAATCTGCTGACACAAAAGCCCTTTTGCTTTTGGAGATGGGCTTA
TACCAGCTTTTATACATGGACAAAGTACCGGATTATGCGGCCATAAATGAGACAGTAGAGATAGCAAAGAAATTCCTTAG
CAAGAAGGGGGCCAGCTTTTTAAATGCAGTCTTGAGAAGCTACCTCAGGGAGAAGGAAAAGGTTAAGTTCCCTGATAAAC
AAAATTTTCCATATTATTTAAAGGTTACTTACTCTTATCCTGACTGGATAATTGAACGATTTTTGAAGAATTTTGACGCT
GATAAAGCAGAAAAATTGCTTGCGAGCCTCAATGAAAAGCCGGAAATTTCTTATAGAGTTAATACTTTAAAAATTTCTGC
AGAGGAACTTCAAGAAAAACTTAAAAGAGAGGACATCTCTTATAAAAAAGGTTATTATCTTGAGGAGGCTCTGTACATCG
ATTTGAAAAACCCTGAAAGCCATCCCATTTATAAAGATGGATTGATACACCCTCAGGATGAGGCTTCAATGCTGGTTTCA
AGGATTTTATCACCTCAAAAAGGGGAAAGGATACTTGATGTGTGCGCTGCTCCGGGAGGAAAGACAACTCATATAAGCCA
GATTATGGAAAATACTGGAGAGGTTGTTGCTTTTGATTTACATCCCCACAGGTTGAAGCTTATAGAAGAAAACTGCAGAA
GACTAGGGGTTACAAATGTTAAGACAGAAGTGTTTGACGCGACCTTTGTAAATGAAAGCTATCTAGAAAAGGCTGACAGG
GTTTTGGCAGATGTTCCCTGTACAGGTATAGGGATAATAAGAAAAAAACCTGACATAAAGCTAAAAAGTTATGATAAAGA
AGAGTTGAGAGGTCTCATTGAGAGGCAGTACAGGATTTTAAAGTCAAGCTCTCTCTATGTAAAAAAAGGTGGAGTTTTAG
TCTATAGCACCTGCACTATTGGCAGAGAAGAGAATCAGGAAGTCATAGAGAGATTTTTAAAGGAGCATAAGAATTTCGAG
CCTGCGGATATTTCAGAAGACCTCCCTTTAAACCTTAAAGTAAAGACTTCTGATTTAGGATATATACAGACGACTCCCTT
AGAACACAAGATTGATGGGTTTTTCATAGCTAAATTAAAAAGAATATATTAA

Upstream 100 bases:

>100_bases
GGCTTTAACTTATGTGGCTGCCGCGCTAGTTTCTATAATGCAGCTTTTGAGGCTTTTCATCATAAGGGATAGCAGAGAGT
AAAGGAGATAAGAGGGTTAA

Downstream 100 bases:

>100_bases
ACTGGAGGTAATAGAAGTTGTACAACCTGAAGGATATGACTTTGGAGGAGATGGAAGAGTTTTTTGTCAACTTAGGTGAG
AGCAAATTTAGGGCAAAACA

Product: tRNA and rRNA cytosine-C5-methylase

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MNARELAYRILYDVVVKKAYINISFAKHLRNDEVKEVDAAFVKELVYGVIERKYTLDFILSFFIKKSADTKALLLLEMGL
YQLLYMDKVPDYAAINETVEIAKKFLSKKGASFLNAVLRSYLREKEKVKFPDKQNFPYYLKVTYSYPDWIIERFLKNFDA
DKAEKLLASLNEKPEISYRVNTLKISAEELQEKLKREDISYKKGYYLEEALYIDLKNPESHPIYKDGLIHPQDEASMLVS
RILSPQKGERILDVCAAPGGKTTHISQIMENTGEVVAFDLHPHRLKLIEENCRRLGVTNVKTEVFDATFVNESYLEKADR
VLADVPCTGIGIIRKKPDIKLKSYDKEELRGLIERQYRILKSSSLYVKKGGVLVYSTCTIGREENQEVIERFLKEHKNFE
PADISEDLPLNLKVKTSDLGYIQTTPLEHKIDGFFIAKLKRIY

Sequences:

>Translated_443_residues
MNARELAYRILYDVVVKKAYINISFAKHLRNDEVKEVDAAFVKELVYGVIERKYTLDFILSFFIKKSADTKALLLLEMGL
YQLLYMDKVPDYAAINETVEIAKKFLSKKGASFLNAVLRSYLREKEKVKFPDKQNFPYYLKVTYSYPDWIIERFLKNFDA
DKAEKLLASLNEKPEISYRVNTLKISAEELQEKLKREDISYKKGYYLEEALYIDLKNPESHPIYKDGLIHPQDEASMLVS
RILSPQKGERILDVCAAPGGKTTHISQIMENTGEVVAFDLHPHRLKLIEENCRRLGVTNVKTEVFDATFVNESYLEKADR
VLADVPCTGIGIIRKKPDIKLKSYDKEELRGLIERQYRILKSSSLYVKKGGVLVYSTCTIGREENQEVIERFLKEHKNFE
PADISEDLPLNLKVKTSDLGYIQTTPLEHKIDGFFIAKLKRIY
>Mature_443_residues
MNARELAYRILYDVVVKKAYINISFAKHLRNDEVKEVDAAFVKELVYGVIERKYTLDFILSFFIKKSADTKALLLLEMGL
YQLLYMDKVPDYAAINETVEIAKKFLSKKGASFLNAVLRSYLREKEKVKFPDKQNFPYYLKVTYSYPDWIIERFLKNFDA
DKAEKLLASLNEKPEISYRVNTLKISAEELQEKLKREDISYKKGYYLEEALYIDLKNPESHPIYKDGLIHPQDEASMLVS
RILSPQKGERILDVCAAPGGKTTHISQIMENTGEVVAFDLHPHRLKLIEENCRRLGVTNVKTEVFDATFVNESYLEKADR
VLADVPCTGIGIIRKKPDIKLKSYDKEELRGLIERQYRILKSSSLYVKKGGVLVYSTCTIGREENQEVIERFLKEHKNFE
PADISEDLPLNLKVKTSDLGYIQTTPLEHKIDGFFIAKLKRIY

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=330, Percent_Identity=32.7272727272727, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI76150623, Length=330, Percent_Identity=32.7272727272727, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI32698918, Length=174, Percent_Identity=37.3563218390805, Blast_Score=118, Evalue=9e-27,
Organism=Homo sapiens, GI8922322, Length=288, Percent_Identity=28.8194444444444, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI270288818, Length=288, Percent_Identity=28.8194444444444, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI23199998, Length=288, Percent_Identity=28.8194444444444, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI270288816, Length=288, Percent_Identity=28.8194444444444, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI39995082, Length=201, Percent_Identity=31.8407960199005, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI301336155, Length=201, Percent_Identity=31.8407960199005, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI11545785, Length=176, Percent_Identity=31.25, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI40316918, Length=169, Percent_Identity=33.1360946745562, Blast_Score=70, Evalue=4e-12,
Organism=Escherichia coli, GI2367212, Length=417, Percent_Identity=30.9352517985612, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI87081985, Length=293, Percent_Identity=32.4232081911263, Blast_Score=147, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17536757, Length=315, Percent_Identity=31.4285714285714, Blast_Score=130, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI71998419, Length=302, Percent_Identity=28.1456953642384, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI115534021, Length=226, Percent_Identity=30.9734513274336, Blast_Score=102, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI25143471, Length=213, Percent_Identity=32.3943661971831, Blast_Score=91, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6324268, Length=315, Percent_Identity=31.7460317460317, Blast_Score=129, Evalue=7e-31,
Organism=Saccharomyces cerevisiae, GI6319447, Length=184, Percent_Identity=32.0652173913043, Blast_Score=90, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6324306, Length=204, Percent_Identity=28.921568627451, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI22024126, Length=318, Percent_Identity=31.7610062893082, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24668781, Length=241, Percent_Identity=30.7053941908714, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI21356513, Length=241, Percent_Identity=30.7053941908714, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI21355201, Length=186, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=8e-21,
Organism=Drosophila melanogaster, GI21356579, Length=182, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 51288; Mature: 51288

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNARELAYRILYDVVVKKAYINISFAKHLRNDEVKEVDAAFVKELVYGVIERKYTLDFIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFFIKKSADTKALLLLEMGLYQLLYMDKVPDYAAINETVEIAKKFLSKKGASFLNAVLRS
HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
YLREKEKVKFPDKQNFPYYLKVTYSYPDWIIERFLKNFDADKAEKLLASLNEKPEISYRV
HHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEE
NTLKISAEELQEKLKREDISYKKGYYLEEALYIDLKNPESHPIYKDGLIHPQDEASMLVS
EEEEECHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
RILSPQKGERILDVCAAPGGKTTHISQIMENTGEVVAFDLHPHRLKLIEENCRRLGVTNV
HHCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCC
KTEVFDATFVNESYLEKADRVLADVPCTGIGIIRKKPDIKLKSYDKEELRGLIERQYRIL
HHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
KSSSLYVKKGGVLVYSTCTIGREENQEVIERFLKEHKNFEPADISEDLPLNLKVKTSDLG
HCCCEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC
YIQTTPLEHKIDGFFIAKLKRIY
EEECCCCCHHCCHHHHHHHHHCC
>Mature Secondary Structure
MNARELAYRILYDVVVKKAYINISFAKHLRNDEVKEVDAAFVKELVYGVIERKYTLDFIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFFIKKSADTKALLLLEMGLYQLLYMDKVPDYAAINETVEIAKKFLSKKGASFLNAVLRS
HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
YLREKEKVKFPDKQNFPYYLKVTYSYPDWIIERFLKNFDADKAEKLLASLNEKPEISYRV
HHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEE
NTLKISAEELQEKLKREDISYKKGYYLEEALYIDLKNPESHPIYKDGLIHPQDEASMLVS
EEEEECHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
RILSPQKGERILDVCAAPGGKTTHISQIMENTGEVVAFDLHPHRLKLIEENCRRLGVTNV
HHCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCC
KTEVFDATFVNESYLEKADRVLADVPCTGIGIIRKKPDIKLKSYDKEELRGLIERQYRIL
HHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
KSSSLYVKKGGVLVYSTCTIGREENQEVIERFLKEHKNFEPADISEDLPLNLKVKTSDLG
HCCCEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC
YIQTTPLEHKIDGFFIAKLKRIY
EEECCCCCHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377; 9086272 [H]