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The map label for this gene is FliF [H]

Identifier: 20807889

GI number: 20807889

Start: 1417311

End: 1418822

Strand: Reverse

Name: FliF [H]

Synonym: TTE1442

Alternate gene names: 20807889

Gene position: 1418822-1417311 (Counterclockwise)

Preceding gene: 20807890

Following gene: 20807888

Centisome position: 52.76

GC content: 38.76

Gene sequence:

>1512_bases
ATGCCACAATCTATCGCTAATTTTAGAGAACAGCTTTTAAACTTTTGGAATAAGTTTGACAAGAAACAAAAGATACAGCT
TACGGTTATAGCAATTTTAGTGTTTATAAGCATCAGTTTGCTTGTATACATAGCCAATAGGCCTAATTACGTGGTATTGT
ATTCTAATTTGAGCTTAAAAGATGCTGGAATAGTAGTAGAGAAATTAAAAAGCGATTTTAAAGTCCCATATAAATTATCG
GACAATGGGACGACAATTTTAGTACCTGCTCAGTATAAAGATGAAATAAGGATGAAATTGGCGACAGAGGGTATACCTCA
GGGAGGATTTAGCTTTCAAGATGCGATGAACAACTCGCTTTCCACAACAGACCAGGAAAGGAGACAGAAGTACCTGTACT
TTGTACAAAATGAGATACAAAATTCGCTGAAAACCATAGAAGGTGTGCAAGATGCGATTGTAAATATTGTAGTTCCTGAC
CAGAACGCCTTTGTGCTTTCCAATACTACCAATCAAGCGACAGCGGCTGTCATGCTTACTTTAAAGCCTGGAGCTACTTT
GACCCCTTCGCAAGTTAAGGGAATAATAGATTTCGTTTCAAAAAGTGTAGAAGGGTTAAAACCAGAAAACGTTACTGTAA
TTGATAGTACAGGAAAAATTTTGACCCCAGAGAGCGATTCTATTGCAGAGAATGCCAGCAATCAGTTTGCCCTTCAAAAA
AAAGTGCAGGAGGACTTGCAAAATAGCCTTCAGACCCTTTTAGAGCAGGTGTTTGGACCAGGCAATGTGGTAGTGAGGGC
AAATGTGAGGTTAAATTTCGATAAAAAGACAGAGGACAGAATTGAATACACTCCTGTTCAGGGAAATGACAACAAAGGAA
TTGTTAGAAGTGTGCAGGAATTAAAAGAAAAGGCAACAGGGACACAAAGTGGAAGCCCCCCAGGACAACCAACGAATAAT
CCTCCAGTTTATAATCAACAAAATAACAATACCTCCAGTTATGACAAAACGGAAACTACTATAAATTATGAGATAAACCA
GATAAAGACAACTCTTGTAGAGGCACAAGGGAAAATTGAGAGCATTTCTGTAGCAGTTGTTGTAAATAAGCCTTTAAATG
CCTCTATGCAGCAGCAAATTGCAGATTTAGTTGCAAATGCTGCAGGAGGGAATAATGTAAAAGTATCAGTACAAGGGATA
CCTTTTAACCAGGATTTGCTTAAAGCTATGCAGGCGCAGAAGAAAGTCGCTCAAGGAATGCCTATTTACTTGTGGGGAAT
TATAGCTGCCTTGGCTGTAGGAGGAGGCTTAGTCGCTTTTCTGATGATTAGAAGAAGGAAAACAAAGGAAGTCATTCCTC
CTGCTGAGGAAGAAGTGCTTGCGACAGCAGAACCTGTTGAAGAGATAGTTATCACAGAAAAAGATGAAAAGAAGAAGCAA
ATAGAGAAGCTGATAAGAGAAAAGCCCGATATTGTAGTTCAACTTATAAGAACGTGGCTTAATGAAGAGTAG

Upstream 100 bases:

>100_bases
ACTTCAGCTTACAATTCAGATTAAGAACAAGGTGCTGGAGGCCTATCAAGAGATAATGAGGATGCCGCTTTAATGTCTTG
CGATGAAATGAGGTGAATCA

Downstream 100 bases:

>100_bases
GTGATAATATGGCGAGAGGAGCTTTAACTGGAAGGCAGAAAAGCGCAATGCTTTTAATAGCCTTGGGTCCAGAACTTTCT
GCCGAGATTTACAAGCACTT

Product: flagellar biosynthesis/type III secretory pathway lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MPQSIANFREQLLNFWNKFDKKQKIQLTVIAILVFISISLLVYIANRPNYVVLYSNLSLKDAGIVVEKLKSDFKVPYKLS
DNGTTILVPAQYKDEIRMKLATEGIPQGGFSFQDAMNNSLSTTDQERRQKYLYFVQNEIQNSLKTIEGVQDAIVNIVVPD
QNAFVLSNTTNQATAAVMLTLKPGATLTPSQVKGIIDFVSKSVEGLKPENVTVIDSTGKILTPESDSIAENASNQFALQK
KVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVRSVQELKEKATGTQSGSPPGQPTNN
PPVYNQQNNNTSSYDKTETTINYEINQIKTTLVEAQGKIESISVAVVVNKPLNASMQQQIADLVANAAGGNNVKVSVQGI
PFNQDLLKAMQAQKKVAQGMPIYLWGIIAALAVGGGLVAFLMIRRRKTKEVIPPAEEEVLATAEPVEEIVITEKDEKKKQ
IEKLIREKPDIVVQLIRTWLNEE

Sequences:

>Translated_503_residues
MPQSIANFREQLLNFWNKFDKKQKIQLTVIAILVFISISLLVYIANRPNYVVLYSNLSLKDAGIVVEKLKSDFKVPYKLS
DNGTTILVPAQYKDEIRMKLATEGIPQGGFSFQDAMNNSLSTTDQERRQKYLYFVQNEIQNSLKTIEGVQDAIVNIVVPD
QNAFVLSNTTNQATAAVMLTLKPGATLTPSQVKGIIDFVSKSVEGLKPENVTVIDSTGKILTPESDSIAENASNQFALQK
KVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVRSVQELKEKATGTQSGSPPGQPTNN
PPVYNQQNNNTSSYDKTETTINYEINQIKTTLVEAQGKIESISVAVVVNKPLNASMQQQIADLVANAAGGNNVKVSVQGI
PFNQDLLKAMQAQKKVAQGMPIYLWGIIAALAVGGGLVAFLMIRRRKTKEVIPPAEEEVLATAEPVEEIVITEKDEKKKQ
IEKLIREKPDIVVQLIRTWLNEE
>Mature_502_residues
PQSIANFREQLLNFWNKFDKKQKIQLTVIAILVFISISLLVYIANRPNYVVLYSNLSLKDAGIVVEKLKSDFKVPYKLSD
NGTTILVPAQYKDEIRMKLATEGIPQGGFSFQDAMNNSLSTTDQERRQKYLYFVQNEIQNSLKTIEGVQDAIVNIVVPDQ
NAFVLSNTTNQATAAVMLTLKPGATLTPSQVKGIIDFVSKSVEGLKPENVTVIDSTGKILTPESDSIAENASNQFALQKK
VQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVRSVQELKEKATGTQSGSPPGQPTNNP
PVYNQQNNNTSSYDKTETTINYEINQIKTTLVEAQGKIESISVAVVVNKPLNASMQQQIADLVANAAGGNNVKVSVQGIP
FNQDLLKAMQAQKKVAQGMPIYLWGIIAALAVGGGLVAFLMIRRRKTKEVIPPAEEEVLATAEPVEEIVITEKDEKKKQI
EKLIREKPDIVVQLIRTWLNEE

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=427, Percent_Identity=29.7423887587822, Blast_Score=157, Evalue=1e-39,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 55687; Mature: 55556

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQSIANFREQLLNFWNKFDKKQKIQLTVIAILVFISISLLVYIANRPNYVVLYSNLSLK
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCC
DAGIVVEKLKSDFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQGGFSFQDAMNNSL
HHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHCCCC
STTDQERRQKYLYFVQNEIQNSLKTIEGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEECCCCCCEEEEEEE
LKPGATLTPSQVKGIIDFVSKSVEGLKPENVTVIDSTGKILTPESDSIAENASNQFALQK
ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEECCCCCHHHHCCCHHHHHHH
KVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVRSVQE
HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHH
LKEKATGTQSGSPPGQPTNNPPVYNQQNNNTSSYDKTETTINYEINQIKTTLVEAQGKIE
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCEE
SISVAVVVNKPLNASMQQQIADLVANAAGGNNVKVSVQGIPFNQDLLKAMQAQKKVAQGM
EEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCC
PIYLWGIIAALAVGGGLVAFLMIRRRKTKEVIPPAEEEVLATAEPVEEIVITEKDEKKKQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHCCCCHHHHHH
IEKLIREKPDIVVQLIRTWLNEE
HHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PQSIANFREQLLNFWNKFDKKQKIQLTVIAILVFISISLLVYIANRPNYVVLYSNLSLK
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCC
DAGIVVEKLKSDFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQGGFSFQDAMNNSL
HHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHCCCC
STTDQERRQKYLYFVQNEIQNSLKTIEGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEECCCCCCEEEEEEE
LKPGATLTPSQVKGIIDFVSKSVEGLKPENVTVIDSTGKILTPESDSIAENASNQFALQK
ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEECCCCCHHHHCCCHHHHHHH
KVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVRSVQE
HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHH
LKEKATGTQSGSPPGQPTNNPPVYNQQNNNTSSYDKTETTINYEINQIKTTLVEAQGKIE
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCEE
SISVAVVVNKPLNASMQQQIADLVANAAGGNNVKVSVQGIPFNQDLLKAMQAQKKVAQGM
EEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCC
PIYLWGIIAALAVGGGLVAFLMIRRRKTKEVIPPAEEEVLATAEPVEEIVITEKDEKKKQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHCCCCHHHHHH
IEKLIREKPDIVVQLIRTWLNEE
HHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]