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The map label for this gene is Nfo

Identifier: 20807725

GI number: 20807725

Start: 1272032

End: 1272898

Strand: Direct

Name: Nfo

Synonym: TTE1276

Alternate gene names: NA

Gene position: 1272032-1272898 (Clockwise)

Preceding gene: 20807724

Following gene: 20807726

Centisome position: 47.3

GC content: 40.37

Gene sequence:

>867_bases
TTGGGGATTAAGTTTGGGCCTTCTGGAATCTCGCAGAGCTTTTACGACGAGGGACATAAGTCTTCTGCTGAGATGCCAGA
ATGGCTTCATAAAATGGGACTTGAGGCTTACGAATACTCTTTTTCTAGAGGAGTGAGAATAAGCGAAAAATTAGCTTTGC
AGCTTAAAGAGAATGCAGAAAAATTTAATATTACAATTACAATCCACGCTCCTTATTACATAAATCTTGCGGCGGCAGAA
GAGGAAAAGATAAAAAATTCTAAAAGGTACATAATTGAAAGTTTGACCGCAGGGAATTTGATGGGAGCAAAAAGAGTTAC
GTTTCACCCTGGTTCTGCTTCTTTGGACAGAAGAGAAGCACTTGATAGGGCAAAAAGAGTTTTGAAGGAGGTTATAAAAG
AAGCTGATGACTTGGGACTGGGTCATATAACCTTGTGTCCCGAGACGATGGGCAAGAAAAATCAGCTGGGCACTTTGGAG
GAAGTCTTGGAACTCTGTCAGCTAGATGAGAGACTTCTTCCTACCGTGGATTTTGCCCATTTGCATGCTCGAGACAATGG
AAGGTTTAAATCTATAGAAGATTATGAAGAAGTTTTAAACACGATAGAAAAATATCTAGGAAAAGATAGGGCAAAAGTTA
TACACGTCCACTTCAGCAGAATTGAATTTACAGAGCAGGGGGAAAAGAAGCACTGGACATTGCTTGATAAAGAATACGGG
CCTGAATTTGAGCCGCTGGCTCAGCTTTTTTATGAAAGAAATATGGAGCCCATAGTTATTTGTGAATCTCGTGAGAGGAT
GGCAGAAGACGCATTAGAACTTAAGAGAATATACCAAGAGGTGGCAAAAAGGGTGTCAAAAACATGA

Upstream 100 bases:

>100_bases
ATTTGCAGATTACACTATAGACGTCTCTGACAAGACAATAGAGGAAGTCGCTGAAGAAGTCATAAGAGCGTATATAAAGC
TTAAGGGGAGATGATGAATT

Downstream 100 bases:

>100_bases
GGATTGTAGTTAAGGTTGGGACTAGTACTTTGACTCATGAAAATGGGAAATTGAATTTAGAAATAATGGAAAAACTAGTA
AGACAAATCGCAAATTTGTC

Product: endonuclease IV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MGIKFGPSGISQSFYDEGHKSSAEMPEWLHKMGLEAYEYSFSRGVRISEKLALQLKENAEKFNITITIHAPYYINLAAAE
EEKIKNSKRYIIESLTAGNLMGAKRVTFHPGSASLDRREALDRAKRVLKEVIKEADDLGLGHITLCPETMGKKNQLGTLE
EVLELCQLDERLLPTVDFAHLHARDNGRFKSIEDYEEVLNTIEKYLGKDRAKVIHVHFSRIEFTEQGEKKHWTLLDKEYG
PEFEPLAQLFYERNMEPIVICESRERMAEDALELKRIYQEVAKRVSKT

Sequences:

>Translated_288_residues
MGIKFGPSGISQSFYDEGHKSSAEMPEWLHKMGLEAYEYSFSRGVRISEKLALQLKENAEKFNITITIHAPYYINLAAAE
EEKIKNSKRYIIESLTAGNLMGAKRVTFHPGSASLDRREALDRAKRVLKEVIKEADDLGLGHITLCPETMGKKNQLGTLE
EVLELCQLDERLLPTVDFAHLHARDNGRFKSIEDYEEVLNTIEKYLGKDRAKVIHVHFSRIEFTEQGEKKHWTLLDKEYG
PEFEPLAQLFYERNMEPIVICESRERMAEDALELKRIYQEVAKRVSKT
>Mature_287_residues
GIKFGPSGISQSFYDEGHKSSAEMPEWLHKMGLEAYEYSFSRGVRISEKLALQLKENAEKFNITITIHAPYYINLAAAEE
EKIKNSKRYIIESLTAGNLMGAKRVTFHPGSASLDRREALDRAKRVLKEVIKEADDLGLGHITLCPETMGKKNQLGTLEE
VLELCQLDERLLPTVDFAHLHARDNGRFKSIEDYEEVLNTIEKYLGKDRAKVIHVHFSRIEFTEQGEKKHWTLLDKEYGP
EFEPLAQLFYERNMEPIVICESRERMAEDALELKRIYQEVAKRVSKT

Specific function: Unknown

COG id: COG0648

COG function: function code L; Endonuclease IV

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001719
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 3.1.21.2

Molecular weight: Translated: 33179; Mature: 33048

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIKFGPSGISQSFYDEGHKSSAEMPEWLHKMGLEAYEYSFSRGVRISEKLALQLKENAE
CCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCC
KFNITITIHAPYYINLAAAEEEKIKNSKRYIIESLTAGNLMGAKRVTFHPGSASLDRREA
EEEEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHH
LDRAKRVLKEVIKEADDLGLGHITLCPETMGKKNQLGTLEEVLELCQLDERLLPTVDFAH
HHHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
LHARDNGRFKSIEDYEEVLNTIEKYLGKDRAKVIHVHFSRIEFTEQGEKKHWTLLDKEYG
EEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHEEHHHCCCCCCEEEECCCCC
PEFEPLAQLFYERNMEPIVICESRERMAEDALELKRIYQEVAKRVSKT
CCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GIKFGPSGISQSFYDEGHKSSAEMPEWLHKMGLEAYEYSFSRGVRISEKLALQLKENAE
CCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCC
KFNITITIHAPYYINLAAAEEEKIKNSKRYIIESLTAGNLMGAKRVTFHPGSASLDRREA
EEEEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHH
LDRAKRVLKEVIKEADDLGLGHITLCPETMGKKNQLGTLEEVLELCQLDERLLPTVDFAH
HHHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
LHARDNGRFKSIEDYEEVLNTIEKYLGKDRAKVIHVHFSRIEFTEQGEKKHWTLLDKEYG
EEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHEEHHHCCCCCCEEEECCCCC
PEFEPLAQLFYERNMEPIVICESRERMAEDALELKRIYQEVAKRVSKT
CCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]