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The map label for this gene is yomE [H]

Identifier: 20807483

GI number: 20807483

Start: 1005498

End: 1006442

Strand: Direct

Name: yomE [H]

Synonym: TTE1003

Alternate gene names: 20807483

Gene position: 1005498-1006442 (Clockwise)

Preceding gene: 20807482

Following gene: 20807484

Centisome position: 37.39

GC content: 39.68

Gene sequence:

>945_bases
ATGCTAAAAAGAGCGATTGCTTTTATAATTTTTGAGGTACTTTTTGTTTCTATTACCATGCCCGTTTTGATGTTTTACGG
TCCTTTTACAAGGGTGAGAGATACTTTTGTCGCTACTGCCATGACTACTTTTACCCACCAATACCTGGCTACTCTGTTTT
TGCCCAAAAAGGTGATAGATAAAATAATGTCTGAAAGCAAAATAGAAAGTGGTAGAACTGATAAAAATTTAATACATGTG
AACGGGGGAAAGGATAGAAGGATTGAACTTTATAATGTGTACGGCAAGCATTTTGAAGGAAAAGTGATTTTGATTCATGA
CCCTACTAGAGTAGAAGTAGGGACATCTAGTAAATTCCCATATGAAGGGGAGACCACAAGTGTAATTGCGAAACACTATA
ATGCTCTAGCGGCTATAAATGCTGGAGGCTTTGGAGACAGCAGTATGAAAGGTATAGGTGGGGCTCCTCAGGGGTTTGTG
ATACACAGAGGGAAACTACTGTATACAGAGATTAAAAATCCGGATGAAAAAGTGGATTTAATTGGTTTTACAAATGATGG
TAAGTTGATGGTTGGAAAGTACAGGTACAAAGAAGTACTCAATATGGGCATAAAAGAGGCGGTAAGCTTTGGGCCAGCCC
TTGTCATTAACGGACAAGCCATGATAAAAAAAGGAGATGGAGGTTGGGGGATAGCTCCTCGAACTGCCATAGGTCAGAGG
AAAGATGGAACAGTGATTTTTTTGGTGATAGATGGCAGAACTTTAAAGAGCATAGGTGCTACTTTAAAGGATGTGCAAGA
TATAATGCTCAAATACGGAGCTTATAATGCAGCTAACCTCGATGGGGGTTCTTCTACAACGATGTACTTTAAGGGGAAAG
TGATAAATCACCCTTCTGATGCTCTGGGAGAAAGAGCCGTTCCTACCATATTCTTTGTAAGATGA

Upstream 100 bases:

>100_bases
CGATGCAGTCCCTTTCTAAATTTTTTACACATTTTTAACAAATTTTTAATCTAATAAAGTTATAATATTTGTGGCAAATC
ATATGTGAATGGGGTGGAAC

Downstream 100 bases:

>100_bases
GGAGGATTTTTGAGGTGAAGATTAAGAAGGTCTTAAAATGGGCATTTGCTACTCTGGCATTAGAACTGGCATTTCTTTAC
TATTTAAACAATGTATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLKRAIAFIIFEVLFVSITMPVLMFYGPFTRVRDTFVATAMTTFTHQYLATLFLPKKVIDKIMSESKIESGRTDKNLIHV
NGGKDRRIELYNVYGKHFEGKVILIHDPTRVEVGTSSKFPYEGETTSVIAKHYNALAAINAGGFGDSSMKGIGGAPQGFV
IHRGKLLYTEIKNPDEKVDLIGFTNDGKLMVGKYRYKEVLNMGIKEAVSFGPALVINGQAMIKKGDGGWGIAPRTAIGQR
KDGTVIFLVIDGRTLKSIGATLKDVQDIMLKYGAYNAANLDGGSSTTMYFKGKVINHPSDALGERAVPTIFFVR

Sequences:

>Translated_314_residues
MLKRAIAFIIFEVLFVSITMPVLMFYGPFTRVRDTFVATAMTTFTHQYLATLFLPKKVIDKIMSESKIESGRTDKNLIHV
NGGKDRRIELYNVYGKHFEGKVILIHDPTRVEVGTSSKFPYEGETTSVIAKHYNALAAINAGGFGDSSMKGIGGAPQGFV
IHRGKLLYTEIKNPDEKVDLIGFTNDGKLMVGKYRYKEVLNMGIKEAVSFGPALVINGQAMIKKGDGGWGIAPRTAIGQR
KDGTVIFLVIDGRTLKSIGATLKDVQDIMLKYGAYNAANLDGGSSTTMYFKGKVINHPSDALGERAVPTIFFVR
>Mature_314_residues
MLKRAIAFIIFEVLFVSITMPVLMFYGPFTRVRDTFVATAMTTFTHQYLATLFLPKKVIDKIMSESKIESGRTDKNLIHV
NGGKDRRIELYNVYGKHFEGKVILIHDPTRVEVGTSSKFPYEGETTSVIAKHYNALAAINAGGFGDSSMKGIGGAPQGFV
IHRGKLLYTEIKNPDEKVDLIGFTNDGKLMVGKYRYKEVLNMGIKEAVSFGPALVINGQAMIKKGDGGWGIAPRTAIGQR
KDGTVIFLVIDGRTLKSIGATLKDVQDIMLKYGAYNAANLDGGSSTTMYFKGKVINHPSDALGERAVPTIFFVR

Specific function: Unknown

COG id: COG4632

COG function: function code G; Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018711
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF09992 DUF2233 [H]

EC number: NA

Molecular weight: Translated: 34502; Mature: 34502

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRAIAFIIFEVLFVSITMPVLMFYGPFTRVRDTFVATAMTTFTHQYLATLFLPKKVID
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
KIMSESKIESGRTDKNLIHVNGGKDRRIELYNVYGKHFEGKVILIHDPTRVEVGTSSKFP
HHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCEEEECCCCCCC
YEGETTSVIAKHYNALAAINAGGFGDSSMKGIGGAPQGFVIHRGKLLYTEIKNPDEKVDL
CCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCEEE
IGFTNDGKLMVGKYRYKEVLNMGIKEAVSFGPALVINGQAMIKKGDGGWGIAPRTAIGQR
EEEECCCCEEEEHHHHHHHHHHCHHHHHHCCCEEEECCEEEEEECCCCCCCCCCCCCCCC
KDGTVIFLVIDGRTLKSIGATLKDVQDIMLKYGAYNAANLDGGSSTTMYFKGKVINHPSD
CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCH
ALGERAVPTIFFVR
HHCCCCCCEEEEEC
>Mature Secondary Structure
MLKRAIAFIIFEVLFVSITMPVLMFYGPFTRVRDTFVATAMTTFTHQYLATLFLPKKVID
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
KIMSESKIESGRTDKNLIHVNGGKDRRIELYNVYGKHFEGKVILIHDPTRVEVGTSSKFP
HHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCEEEECCCCCCC
YEGETTSVIAKHYNALAAINAGGFGDSSMKGIGGAPQGFVIHRGKLLYTEIKNPDEKVDL
CCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCEEE
IGFTNDGKLMVGKYRYKEVLNMGIKEAVSFGPALVINGQAMIKKGDGGWGIAPRTAIGQR
EEEECCCCEEEEHHHHHHHHHHCHHHHHHCCCEEEECCEEEEEECCCCCCCCCCCCCCCC
KDGTVIFLVIDGRTLKSIGATLKDVQDIMLKYGAYNAANLDGGSSTTMYFKGKVINHPSD
CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCH
ALGERAVPTIFFVR
HHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]