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The map label for this gene is ybeY [C]

Identifier: 20807452

GI number: 20807452

Start: 975424

End: 975900

Strand: Direct

Name: ybeY [C]

Synonym: TTE0972

Alternate gene names: 20807452

Gene position: 975424-975900 (Clockwise)

Preceding gene: 20807451

Following gene: 20807453

Centisome position: 36.27

GC content: 39.83

Gene sequence:

>477_bases
ATGAACGTCTTGATTGATAACAGGCAAACTAAAGTGGATGCCTCAGGTTTGGAAGCCCTTGTTGTGAGGGCAATTAAAGC
TACTTTAGAAGAGGAAGAAGTTGTAGATGAAGTTGAAGTTAGCGTCTCTTTTGTGGACAATGAGGAGATAAGGAAATTGA
ATAAATACTACAGAGGGATTGACAGCTCTACAGATGTGCTTTCTTTTCCTCTTATGGAATTTGAGGAAATTGAAGAGGGA
GAAGAAGATGAAAAAGATGCTGAGGAAATATATCCGATAGGAGATATAGTAATATCTTTAGAAAAGGCCAAGGAACAGGC
AGAAGAATACGGGCATTCTTTTGAAAGGGAAGTAGCTTATTTGACTGTTCACAGCATGCTTCACCTTTTAGGCTATGACC
ACGAGACGGAAGAAGAGAGAAAATTGATGAGGGAGAAAGAGGAAAAAGTAATGGAAAGGTTAGGCCTTAGGCGGTGA

Upstream 100 bases:

>100_bases
AGACGATTAAGGCTTCTTTTCTAAATTCGCTGGCAGGTATGTTTCACAAGAGAATTGAGTATCCTGATATTGAGACAAAT
CAAAACAAAGAGGTGTTAGA

Downstream 100 bases:

>100_bases
TTTTGTGAAGTCAAGAAATTTAATAGATAGTTTTAACTATGCCATAGAGGGGATTCTACACGTTTTTAAAACGCAGAGGA
ACATGAAAATTCACTTTGCA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MNVLIDNRQTKVDASGLEALVVRAIKATLEEEEVVDEVEVSVSFVDNEEIRKLNKYYRGIDSSTDVLSFPLMEFEEIEEG
EEDEKDAEEIYPIGDIVISLEKAKEQAEEYGHSFEREVAYLTVHSMLHLLGYDHETEEERKLMREKEEKVMERLGLRR

Sequences:

>Translated_158_residues
MNVLIDNRQTKVDASGLEALVVRAIKATLEEEEVVDEVEVSVSFVDNEEIRKLNKYYRGIDSSTDVLSFPLMEFEEIEEG
EEDEKDAEEIYPIGDIVISLEKAKEQAEEYGHSFEREVAYLTVHSMLHLLGYDHETEEERKLMREKEEKVMERLGLRR
>Mature_158_residues
MNVLIDNRQTKVDASGLEALVVRAIKATLEEEEVVDEVEVSVSFVDNEEIRKLNKYYRGIDSSTDVLSFPLMEFEEIEEG
EEDEKDAEEIYPIGDIVISLEKAKEQAEEYGHSFEREVAYLTVHSMLHLLGYDHETEEERKLMREKEEKVMERLGLRR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Homo sapiens, GI54607072, Length=123, Percent_Identity=34.1463414634146, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1786880, Length=156, Percent_Identity=34.6153846153846, Blast_Score=73, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_THETN (Q8RB52)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_622623.1
- ProteinModelPortal:   Q8RB52
- SMR:   Q8RB52
- GeneID:   995828
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE0972
- NMPDR:   fig|273068.3.peg.395
- HOGENOM:   HBG734136
- OMA:   DIIIARE
- ProtClustDB:   PRK00016
- BioCyc:   TTEN273068:TTE0972-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18413; Mature: 18413

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVLIDNRQTKVDASGLEALVVRAIKATLEEEEVVDEVEVSVSFVDNEEIRKLNKYYRGI
CCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
DSSTDVLSFPLMEFEEIEEGEEDEKDAEEIYPIGDIVISLEKAKEQAEEYGHSFEREVAY
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
LTVHSMLHLLGYDHETEEERKLMREKEEKVMERLGLRR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNVLIDNRQTKVDASGLEALVVRAIKATLEEEEVVDEVEVSVSFVDNEEIRKLNKYYRGI
CCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
DSSTDVLSFPLMEFEEIEEGEEDEKDAEEIYPIGDIVISLEKAKEQAEEYGHSFEREVAY
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
LTVHSMLHLLGYDHETEEERKLMREKEEKVMERLGLRR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336