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The map label for this gene is NlpD3 [C]

Identifier: 20807388

GI number: 20807388

Start: 915074

End: 915793

Strand: Direct

Name: NlpD3 [C]

Synonym: TTE0907

Alternate gene names: 20807388

Gene position: 915074-915793 (Clockwise)

Preceding gene: 20807387

Following gene: 20807389

Centisome position: 34.02

GC content: 37.78

Gene sequence:

>720_bases
ATGAAATATTATTATTCCAAGAAGATTAACCATTATAGAAAGTACATAGACCTTTTTGAAAACCAATTGATAATAGCGAT
GGTGCTTTTGGGGATGGTTCTTCTTTTTAAAGCAATAGATGTGCCTTTAGCAAATTCCTTTATAAATGTTACAAAAAGCG
TTTTAACTTACAATATGGATTACGAAAATACAAAAAAAGGTCTAAAATTGGTGCAGTCTAAAATTCCATGGCTTAAAGAA
AATGTGGTTAAAGTTTTTTCACAGGCAGAGGAAAAACCTTTTTCTAAAGAAGCTATACAAACATCTTCAAAAATGATGGC
TCCTGTAGAAGGCAGAATAACTTCTGGCTTTGGAGAGAGAGTAGACCCTTTTACAAATAAAGTGACAAAACATACGGGAA
TTGATATCGAAGTGCCTGTAGGTACAGAAGTAAAAGCAGCACTGGATGGGGTTGTGATGCTGGCGACAGAAAAAGAAGAC
CTAGGGAAAGTAGTTGTATTAAGGCATGAAGGCGATGTAAGGACTGTCTATGCTCATCTTTCAGAGATTTTTGTAAAAGA
AGGGCAGCAGATAAGACAGGGAGAGGTAATTGGCAAGTCGGGAGACACAGGAAAAGTTACGGCTCCTCACCTTCACTTTG
AAGTTTGGGAAAATGGCAAGCCCATAGACCCTCTGACAAAGGTAGTGATAAATGAGGCTGCCAGTGAGGAGAGAAAATGA

Upstream 100 bases:

>100_bases
TTGAAAGGAATGGAAATGGGACTTTTAGACTGGAGACAAATTTGATTCATAAGGCGGCCTCCTTCAAAATAAAATGTACA
TAGAAGGAGGCATTGTCATT

Downstream 100 bases:

>100_bases
AGGTAAAAGTCCACTTTTCTACTTTTGTGTTTGGATTGCTTTTGATTTTTTTAGGCTTTGTGAAAGAACTTTTCAGCATA
TTTCTTGTGGTGTGTGTGCA

Product: membrane proteins related to metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKYYYSKKINHYRKYIDLFENQLIIAMVLLGMVLLFKAIDVPLANSFINVTKSVLTYNMDYENTKKGLKLVQSKIPWLKE
NVVKVFSQAEEKPFSKEAIQTSSKMMAPVEGRITSGFGERVDPFTNKVTKHTGIDIEVPVGTEVKAALDGVVMLATEKED
LGKVVVLRHEGDVRTVYAHLSEIFVKEGQQIRQGEVIGKSGDTGKVTAPHLHFEVWENGKPIDPLTKVVINEAASEERK

Sequences:

>Translated_239_residues
MKYYYSKKINHYRKYIDLFENQLIIAMVLLGMVLLFKAIDVPLANSFINVTKSVLTYNMDYENTKKGLKLVQSKIPWLKE
NVVKVFSQAEEKPFSKEAIQTSSKMMAPVEGRITSGFGERVDPFTNKVTKHTGIDIEVPVGTEVKAALDGVVMLATEKED
LGKVVVLRHEGDVRTVYAHLSEIFVKEGQQIRQGEVIGKSGDTGKVTAPHLHFEVWENGKPIDPLTKVVINEAASEERK
>Mature_239_residues
MKYYYSKKINHYRKYIDLFENQLIIAMVLLGMVLLFKAIDVPLANSFINVTKSVLTYNMDYENTKKGLKLVQSKIPWLKE
NVVKVFSQAEEKPFSKEAIQTSSKMMAPVEGRITSGFGERVDPFTNKVTKHTGIDIEVPVGTEVKAALDGVVMLATEKED
LGKVVVLRHEGDVRTVYAHLSEIFVKEGQQIRQGEVIGKSGDTGKVTAPHLHFEVWENGKPIDPLTKVVINEAASEERK

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=116, Percent_Identity=43.1034482758621, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI87082174, Length=109, Percent_Identity=32.1100917431193, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=31.0924369747899, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 26883; Mature: 26883

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYYYSKKINHYRKYIDLFENQLIIAMVLLGMVLLFKAIDVPLANSFINVTKSVLTYNMD
CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
YENTKKGLKLVQSKIPWLKENVVKVFSQAEEKPFSKEAIQTSSKMMAPVEGRITSGFGER
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
VDPFTNKVTKHTGIDIEVPVGTEVKAALDGVVMLATEKEDLGKVVVLRHEGDVRTVYAHL
CCHHHHHHHHHCCCEEEECCCCCHHHHHCCEEEEEECCCCCCCEEEEEECCCHHHHHHHH
SEIFVKEGQQIRQGEVIGKSGDTGKVTAPHLHFEVWENGKPIDPLTKVVINEAASEERK
HHHHHHCCCHHHCCCEECCCCCCCCEECCEEEEEEECCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKYYYSKKINHYRKYIDLFENQLIIAMVLLGMVLLFKAIDVPLANSFINVTKSVLTYNMD
CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
YENTKKGLKLVQSKIPWLKENVVKVFSQAEEKPFSKEAIQTSSKMMAPVEGRITSGFGER
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
VDPFTNKVTKHTGIDIEVPVGTEVKAALDGVVMLATEKEDLGKVVVLRHEGDVRTVYAHL
CCHHHHHHHHHCCCEEEECCCCCHHHHHCCEEEEEECCCCCCCEEEEEECCCHHHHHHHH
SEIFVKEGQQIRQGEVIGKSGDTGKVTAPHLHFEVWENGKPIDPLTKVVINEAASEERK
HHHHHHCCCHHHCCCEECCCCCCCCEECCEEEEEEECCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]