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The map label for this gene is WcaJ [H]

Identifier: 20807156

GI number: 20807156

Start: 667455

End: 668060

Strand: Direct

Name: WcaJ [H]

Synonym: TTE0665

Alternate gene names: 20807156

Gene position: 667455-668060 (Clockwise)

Preceding gene: 20807155

Following gene: 20807157

Centisome position: 24.82

GC content: 31.19

Gene sequence:

>606_bases
TTGAAATTAATTATAAAAAGATTAATTGACATTTTTGTATCACTTTTTTTGTTAATTATTTTGTCTCCTTTTTTAGTCAT
CATATCGCTAATTGTTTTTGTTGCTATGGGACCGCCTGTTATATATAAACAGACAAGAGCGGGGTTTAAAGGAAAGCCTT
TTACAATATATAAATTTAGGACAATGACTAATGAAAAAGATGAATATGGTAATCTTTTACCAGATGAAAAACGCCTGACT
AAAATGGGTAAATTCCTTAGAAGTACAAGTCTTGACGAGTTACCGGAATTATTTAATGTTTTAAAAGGAGATATGAGCTT
AGTGGGGCCAAGACCCTTACTTATGGAATATTTGAATTATTATACAGAAGAACAAATGAGACGTCATGATGTAAAGCCAG
GTATAACTGGTTGGGCACAAGTAAATGGACGCAATAGTCTTTCTTGGGAAGAGAAATTTAAACTTGATGTATGGTATGTA
GATAATTGGAGTTTATGGCTGGATTTTAAAATATTATTCTTAACACTTATAAAAGTAATAAAAAGGGAAGGTCTTTCTGC
TGAAGGTTATGCTACAATGCCAAAATTTACGGGAAGTAAAGATTAA

Upstream 100 bases:

>100_bases
GCCTTTCGGACGAAAGTGATTGTTCCTCAAGAATTTTGATGTCTATTGGAATTGCTTGGCGATTCCTTTCGCGATTTTTA
GAAAAAGGGGGGAATTTTTC

Downstream 100 bases:

>100_bases
GAGATGAAAGGGTAATGACTTATGTTAAAAGATTTATTTATTATTGGAGCAGGTGGGGTAGGTAAAGAGGTTGCGTGGAT
TGTAGAAGAAATAAATAATA

Product: lipopolysaccharide synthesis sugar transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MKLIIKRLIDIFVSLFLLIILSPFLVIISLIVFVAMGPPVIYKQTRAGFKGKPFTIYKFRTMTNEKDEYGNLLPDEKRLT
KMGKFLRSTSLDELPELFNVLKGDMSLVGPRPLLMEYLNYYTEEQMRRHDVKPGITGWAQVNGRNSLSWEEKFKLDVWYV
DNWSLWLDFKILFLTLIKVIKREGLSAEGYATMPKFTGSKD

Sequences:

>Translated_201_residues
MKLIIKRLIDIFVSLFLLIILSPFLVIISLIVFVAMGPPVIYKQTRAGFKGKPFTIYKFRTMTNEKDEYGNLLPDEKRLT
KMGKFLRSTSLDELPELFNVLKGDMSLVGPRPLLMEYLNYYTEEQMRRHDVKPGITGWAQVNGRNSLSWEEKFKLDVWYV
DNWSLWLDFKILFLTLIKVIKREGLSAEGYATMPKFTGSKD
>Mature_201_residues
MKLIIKRLIDIFVSLFLLIILSPFLVIISLIVFVAMGPPVIYKQTRAGFKGKPFTIYKFRTMTNEKDEYGNLLPDEKRLT
KMGKFLRSTSLDELPELFNVLKGDMSLVGPRPLLMEYLNYYTEEQMRRHDVKPGITGWAQVNGRNSLSWEEKFKLDVWYV
DNWSLWLDFKILFLTLIKVIKREGLSAEGYATMPKFTGSKD

Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]

COG id: COG2148

COG function: function code M; Sugar transferases involved in lipopolysaccharide synthesis

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial sugar transferase family [H]

Homologues:

Organism=Escherichia coli, GI1788360, Length=185, Percent_Identity=44.3243243243243, Blast_Score=154, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003362 [H]

Pfam domain/function: PF02397 Bac_transf [H]

EC number: NA

Molecular weight: Translated: 23429; Mature: 23429

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLIIKRLIDIFVSLFLLIILSPFLVIISLIVFVAMGPPVIYKQTRAGFKGKPFTIYKFR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCCCEEEEEEE
TMTNEKDEYGNLLPDEKRLTKMGKFLRSTSLDELPELFNVLKGDMSLVGPRPLLMEYLNY
ECCCCCHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHHH
YTEEQMRRHDVKPGITGWAQVNGRNSLSWEEKFKLDVWYVDNWSLWLDFKILFLTLIKVI
HHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHH
KREGLSAEGYATMPKFTGSKD
HHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKLIIKRLIDIFVSLFLLIILSPFLVIISLIVFVAMGPPVIYKQTRAGFKGKPFTIYKFR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCCCEEEEEEE
TMTNEKDEYGNLLPDEKRLTKMGKFLRSTSLDELPELFNVLKGDMSLVGPRPLLMEYLNY
ECCCCCHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHHH
YTEEQMRRHDVKPGITGWAQVNGRNSLSWEEKFKLDVWYVDNWSLWLDFKILFLTLIKVI
HHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHH
KREGLSAEGYATMPKFTGSKD
HHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969506; 9384377 [H]