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The map label for this gene is CsrA [H]

Identifier: 20807003

GI number: 20807003

Start: 509414

End: 509641

Strand: Direct

Name: CsrA [H]

Synonym: TTE0498

Alternate gene names: 20807003

Gene position: 509414-509641 (Clockwise)

Preceding gene: 20807002

Following gene: 20807004

Centisome position: 18.94

GC content: 34.21

Gene sequence:

>228_bases
ATGCTTATTCTCACGCGTAAAATAGGTCAATCCATAATTATAGGGGAAAATGTAGAAGTAAAGATAGTAAGTATTGAAGA
AGGGAAAGTAAAACTGGGGATTACCGCTCCAAAAGAAGTGACTGTATTAAGAAAAGAACTCATAGAAGTAATGGATGAAA
ATATAAAGGCGGCAAGTGTGAGCAAAGAGGCTGTGAAGGAGATAGAAAAATTTATTAAAAAACGCTAA

Upstream 100 bases:

>100_bases
GCTCCTATAATTATAAACGCTGAAAACAACAGAGGAGTCCAGATTATACTGGATAATGATAAATACCTAATAAAACATCC
TATACTGGAGGAGCTTAAAA

Downstream 100 bases:

>100_bases
AGTAAATCAAAAATATATCGATATATATAGTGAAAACAAAAGATAAACAGTTGGCGCCAACTGTGAGGCAAAATCAAGGC
AGGGATGCCAAAATAAAAAT

Product: carbon storage regulator (could also regulate swarming and quorum sensing)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 75; Mature: 75

Protein sequence:

>75_residues
MLILTRKIGQSIIIGENVEVKIVSIEEGKVKLGITAPKEVTVLRKELIEVMDENIKAASVSKEAVKEIEKFIKKR

Sequences:

>Translated_75_residues
MLILTRKIGQSIIIGENVEVKIVSIEEGKVKLGITAPKEVTVLRKELIEVMDENIKAASVSKEAVKEIEKFIKKR
>Mature_75_residues
MLILTRKIGQSIIIGENVEVKIVSIEEGKVKLGITAPKEVTVLRKELIEVMDENIKAASVSKEAVKEIEKFIKKR

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 8403; Mature: 8403

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRKIGQSIIIGENVEVKIVSIEEGKVKLGITAPKEVTVLRKELIEVMDENIKAASV
CEEEECCCCCEEEECCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCC
SKEAVKEIEKFIKKR
CHHHHHHHHHHHHCC
>Mature Secondary Structure
MLILTRKIGQSIIIGENVEVKIVSIEEGKVKLGITAPKEVTVLRKELIEVMDENIKAASV
CEEEECCCCCEEEECCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCC
SKEAVKEIEKFIKKR
CHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA