BacMap

Definition	Thermoanaerobacter tengcongensis MB4, complete genome.
Accession	NC_003869
Length	2,689,445

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The map label for this gene is CcmA3 [H]

Identifier: 20806945

GI number: 20806945

Start: 448790

End: 449584

Strand: Reverse

Name: CcmA3 [H]

Synonym: TTE0436

Alternate gene names: 20806945

Gene position: 449584-448790 (Counterclockwise)

Preceding gene: 20806946

Following gene: 20806941

Centisome position: 16.72

GC content: 32.45

Gene sequence:

>795_bases
ATGTATGTAGTAGAAGTAAAAAATTTAAGCAAACAAATAGATGGGAAACAAATACTCTCAAGTGTCAGCTTTAAAGTACA
GGAAGGAGAAATAATGGCACTTGTGGGTCCAAATGGCGCAGGAAAAACTACAACATTAAAATGCATAATGAATGCTATGA
AAAAAGACTCTGGTGAAATATTCATATTTGAAAAGCCTTTTCACCCCTCCATAAAAAAGGATATAGCCTTCGTCACAGAA
CACAGAAAGGTCTTTAGCAATTTACAGTTAGCAGATTACTACAAAATGTACAAAACATTATACCCTTTGTGGGACGATAC
TTTTTTTAAAAATTTTCTTTCCAAATATGGATTCAATCTAAATGATGAAATGCAAAAATTTTCAAGAGGTCAAAAAACTC
TAATACTTGCAATTCTGGCTTTCTCAACAAATGCAAAACTCATAATACTTGATGAGCCTACACAGCACCTTGACCCAGCT
ACAAGATTTGAACTAATTGAAATTATAAAGCAGTATGTCAATGAGAAAAAAGGCACAATACTTCTTTCATCCCATGAAAT
ATTTGAATTAGAAGAATACGCAACAAGTTTTGCTATAATAAAAGATGGGAAAATACTCTATACAGACTCAATAGATGAGG
CAAAACAAAAGCACAGAATAGTTAGTCTAAACGAAAACATAAAAGGGGCAAAAGTAATTGCAGTAATGAATAACGAAGTT
TTAGTACAAACCGAAGAAGATATAGGCGAATATCCTCGTCTAAATCAAATAATCGTAGGCTACCTAAAATCCTAA

Upstream 100 bases:

>100_bases
GCTTTACCAGACAGGGAAACTTGGTTTTGTCATTTATATACTCTTCTCTAATCTCCTTTTTGGGTTATTGGTCATATGTA
ATAAAAGGTGGTGAAAATTA

Downstream 100 bases:

>100_bases
GGGGACAGTAATAGGCCAAAAACCTGTCCCCCTAACAAACAAAGCAAACAAAAGGGAACGGTTCCTTTTGTCTGATTTTT
AAATGCATAAAAAATATTAG

Product: ABC-type multidrug transport system, ATPase component

Products: ADP; phosphate; beta-D-galactose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MYVVEVKNLSKQIDGKQILSSVSFKVQEGEIMALVGPNGAGKTTTLKCIMNAMKKDSGEIFIFEKPFHPSIKKDIAFVTE
HRKVFSNLQLADYYKMYKTLYPLWDDTFFKNFLSKYGFNLNDEMQKFSRGQKTLILAILAFSTNAKLIILDEPTQHLDPA
TRFELIEIIKQYVNEKKGTILLSSHEIFELEEYATSFAIIKDGKILYTDSIDEAKQKHRIVSLNENIKGAKVIAVMNNEV
LVQTEEDIGEYPRLNQIIVGYLKS

Sequences:

>Translated_264_residues
MYVVEVKNLSKQIDGKQILSSVSFKVQEGEIMALVGPNGAGKTTTLKCIMNAMKKDSGEIFIFEKPFHPSIKKDIAFVTE
HRKVFSNLQLADYYKMYKTLYPLWDDTFFKNFLSKYGFNLNDEMQKFSRGQKTLILAILAFSTNAKLIILDEPTQHLDPA
TRFELIEIIKQYVNEKKGTILLSSHEIFELEEYATSFAIIKDGKILYTDSIDEAKQKHRIVSLNENIKGAKVIAVMNNEV
LVQTEEDIGEYPRLNQIIVGYLKS
>Mature_264_residues
MYVVEVKNLSKQIDGKQILSSVSFKVQEGEIMALVGPNGAGKTTTLKCIMNAMKKDSGEIFIFEKPFHPSIKKDIAFVTE
HRKVFSNLQLADYYKMYKTLYPLWDDTFFKNFLSKYGFNLNDEMQKFSRGQKTLILAILAFSTNAKLIILDEPTQHLDPA
TRFELIEIIKQYVNEKKGTILLSSHEIFELEEYATSFAIIKDGKILYTDSIDEAKQKHRIVSLNENIKGAKVIAVMNNEV
LVQTEEDIGEYPRLNQIIVGYLKS

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=202, Percent_Identity=26.7326732673267, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI105990541, Length=212, Percent_Identity=27.8301886792453, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI27881501, Length=217, Percent_Identity=25.8064516129032, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI30795238, Length=270, Percent_Identity=24.8148148148148, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI21536376, Length=219, Percent_Identity=27.3972602739726, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI45446740, Length=217, Percent_Identity=29.4930875576037, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI47078218, Length=217, Percent_Identity=29.4930875576037, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI27262624, Length=235, Percent_Identity=23.8297872340426, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI27262626, Length=235, Percent_Identity=23.8297872340426, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI27477115, Length=222, Percent_Identity=25.6756756756757, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI150417984, Length=212, Percent_Identity=26.8867924528302, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI153792144, Length=234, Percent_Identity=23.5042735042735, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI116734710, Length=227, Percent_Identity=25.9911894273128, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI6005701, Length=204, Percent_Identity=25.4901960784314, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI90421313, Length=222, Percent_Identity=27.027027027027, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI31657092, Length=216, Percent_Identity=23.6111111111111, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI27881506, Length=205, Percent_Identity=28.780487804878, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI10947137, Length=205, Percent_Identity=28.780487804878, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1789593, Length=241, Percent_Identity=26.1410788381743, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788472, Length=230, Percent_Identity=28.695652173913, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=25.8928571428571, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787182, Length=211, Percent_Identity=31.2796208530806, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786398, Length=224, Percent_Identity=28.125, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786319, Length=220, Percent_Identity=28.1818181818182, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788761, Length=222, Percent_Identity=26.5765765765766, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI48995001, Length=227, Percent_Identity=24.2290748898678, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787792, Length=218, Percent_Identity=24.3119266055046, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=22.6086956521739, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787112, Length=202, Percent_Identity=26.2376237623762, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081782, Length=223, Percent_Identity=24.6636771300448, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788897, Length=241, Percent_Identity=26.1410788381743, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787712, Length=225, Percent_Identity=25.3333333333333, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786563, Length=212, Percent_Identity=26.4150943396226, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790190, Length=222, Percent_Identity=24.7747747747748, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082268, Length=214, Percent_Identity=26.1682242990654, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367384, Length=208, Percent_Identity=25, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789672, Length=235, Percent_Identity=23.4042553191489, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789751, Length=192, Percent_Identity=26.5625, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789991, Length=208, Percent_Identity=26.9230769230769, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786698, Length=199, Percent_Identity=24.1206030150754, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789864, Length=244, Percent_Identity=21.3114754098361, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786803, Length=202, Percent_Identity=19.8019801980198, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787164, Length=201, Percent_Identity=23.8805970149254, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787041, Length=200, Percent_Identity=25.5, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1790467, Length=214, Percent_Identity=22.4299065420561, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=222, Percent_Identity=25.6756756756757, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=222, Percent_Identity=25.6756756756757, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=222, Percent_Identity=25.6756756756757, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=208, Percent_Identity=25, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=209, Percent_Identity=23.444976076555, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17510237, Length=220, Percent_Identity=25, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321121, Length=191, Percent_Identity=27.7486910994764, Blast_Score=72, Evalue=7e-14,
Organism=Drosophila melanogaster, GI221500365, Length=207, Percent_Identity=26.5700483091787, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007184, Length=207, Percent_Identity=26.5700483091787, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24666092, Length=257, Percent_Identity=27.6264591439689, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24648314, Length=223, Percent_Identity=29.1479820627803, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28574150, Length=214, Percent_Identity=28.9719626168224, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI116007328, Length=214, Percent_Identity=28.9719626168224, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI221512771, Length=218, Percent_Identity=26.1467889908257, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24643674, Length=212, Percent_Identity=25.4716981132075, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24582014, Length=222, Percent_Identity=26.1261261261261, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24582012, Length=222, Percent_Identity=26.1261261261261, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24650855, Length=233, Percent_Identity=24.0343347639485, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24650853, Length=233, Percent_Identity=24.0343347639485, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281362751, Length=236, Percent_Identity=24.1525423728814, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 30223; Mature: 30223

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVVEVKNLSKQIDGKQILSSVSFKVQEGEIMALVGPNGAGKTTTLKCIMNAMKKDSGEI
CEEEEECHHHHHCCHHHHHHHHCEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCE
FIFEKPFHPSIKKDIAFVTEHRKVFSNLQLADYYKMYKTLYPLWDDTFFKNFLSKYGFNL
EEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
NDEMQKFSRGQKTLILAILAFSTNAKLIILDEPTQHLDPATRFELIEIIKQYVNEKKGTI
CHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCCEE
LLSSHEIFELEEYATSFAIIKDGKILYTDSIDEAKQKHRIVSLNENIKGAKVIAVMNNEV
EEECCCHHHHHHHHHEEEEEECCEEEEECCHHHHHHCCEEEEECCCCCCEEEEEEECCEE
LVQTEEDIGEYPRLNQIIVGYLKS
EEEEHHHHCCCCCHHHHHHHEECC
>Mature Secondary Structure
MYVVEVKNLSKQIDGKQILSSVSFKVQEGEIMALVGPNGAGKTTTLKCIMNAMKKDSGEI
CEEEEECHHHHHCCHHHHHHHHCEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCE
FIFEKPFHPSIKKDIAFVTEHRKVFSNLQLADYYKMYKTLYPLWDDTFFKNFLSKYGFNL
EEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
NDEMQKFSRGQKTLILAILAFSTNAKLIILDEPTQHLDPATRFELIEIIKQYVNEKKGTI
CHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCCEE
LLSSHEIFELEEYATSFAIIKDGKILYTDSIDEAKQKHRIVSLNENIKGAKVIAVMNNEV
EEECCCHHHHHHHHHEEEEEECCEEEEECCHHHHHHCCEEEEECCCCCCEEEEEEECCEE
LVQTEEDIGEYPRLNQIIVGYLKS
EEEEHHHHCCCCCHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; beta-D-galactose [Periplasm]; H2O [C]

Specific reaction: ATP + beta-D-galactose [Periplasm] + H2O = ADP + phosphate + beta-D-galactose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]