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The map label for this gene is RpoE

Identifier: 20806840

GI number: 20806840

Start: 340470

End: 340958

Strand: Reverse

Name: RpoE

Synonym: TTE0323

Alternate gene names: NA

Gene position: 340958-340470 (Counterclockwise)

Preceding gene: 20806845

Following gene: 20806839

Centisome position: 12.68

GC content: 31.29

Gene sequence:

>489_bases
GTGCCAGAAAGCTTTATTGAATTTTATGAGAAAAACTTTGACGATGTGTACCGGTACGTATATTTTAAAGTTGGCAACAA
ATGGGATGCAGATGACATTGTAAGTGAAACTTTTCAAAAAGCCTTTGAAAAGTACAATACAGTAAAATCAAACTCAAAGG
CATGGATTTTTTCTATAGCCCGAAATACTGTGACAGACTATTACAGAATGAGGAAAAACCTAGTATCAGAAGAACTCATT
ATGGAGCATTTTTATCCTGATGTATTTGAAGACAAATTGGAAAGGGAAGTAGAATTAGATTGTTTGAAAAAGTCCCTTTA
TTCCCTTTCAAAAGAAGAAATAGAAATTGTAAATTTAAAATACTTTGCAAACATGACACACAGAGAAATTTCTCAATTAA
TTGAAAAAACAGAAGAAGCGGTAAAAGCGCAGGCTTATAGAATAATTCAAAAATTGAAAAATCTTGTAATAAAATGTTTG
GAGGGATGA

Upstream 100 bases:

>100_bases
ATAAAACTAAAATAAATGCAAGGGTATTGTTACCTTTTGTGTAGATTTTCGTCTATAAAGGTGGGAGGAGTCAATAAAGG
AGAGAAGGGAGGCCAAATTT

Downstream 100 bases:

>100_bases
AAATGGACGAAAAGAGAATAGAGGAAAATCTCAATAGGCTAAAAGAACTAATTCCTGTAAATTACCAGCTCAAAGAATCT
CTTAAAAAAAGATTTAAAAG

Product: DNA-directed RNA polymerase specialized sigma subunits, sigma24 homologs

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Sigma Factor; Specialized Sigma Subunit Of RNA Polymerase; DNA-Directed RNA Polymerase; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MPESFIEFYEKNFDDVYRYVYFKVGNKWDADDIVSETFQKAFEKYNTVKSNSKAWIFSIARNTVTDYYRMRKNLVSEELI
MEHFYPDVFEDKLEREVELDCLKKSLYSLSKEEIEIVNLKYFANMTHREISQLIEKTEEAVKAQAYRIIQKLKNLVIKCL
EG

Sequences:

>Translated_162_residues
MPESFIEFYEKNFDDVYRYVYFKVGNKWDADDIVSETFQKAFEKYNTVKSNSKAWIFSIARNTVTDYYRMRKNLVSEELI
MEHFYPDVFEDKLEREVELDCLKKSLYSLSKEEIEIVNLKYFANMTHREISQLIEKTEEAVKAQAYRIIQKLKNLVIKCL
EG
>Mature_161_residues
PESFIEFYEKNFDDVYRYVYFKVGNKWDADDIVSETFQKAFEKYNTVKSNSKAWIFSIARNTVTDYYRMRKNLVSEELIM
EHFYPDVFEDKLEREVELDCLKKSLYSLSKEEIEIVNLKYFANMTHREISQLIEKTEEAVKAQAYRIIQKLKNLVIKCLE
G

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19480; Mature: 19349

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPESFIEFYEKNFDDVYRYVYFKVGNKWDADDIVSETFQKAFEKYNTVKSNSKAWIFSIA
CCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RNTVTDYYRMRKNLVSEELIMEHFYPDVFEDKLEREVELDCLKKSLYSLSKEEIEIVNLK
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFANMTHREISQLIEKTEEAVKAQAYRIIQKLKNLVIKCLEG
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PESFIEFYEKNFDDVYRYVYFKVGNKWDADDIVSETFQKAFEKYNTVKSNSKAWIFSIA
CHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RNTVTDYYRMRKNLVSEELIMEHFYPDVFEDKLEREVELDCLKKSLYSLSKEEIEIVNLK
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFANMTHREISQLIEKTEEAVKAQAYRIIQKLKNLVIKCLEG
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA