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The map label for this gene is RbsD

Identifier: 20806729

GI number: 20806729

Start: 209461

End: 209853

Strand: Direct

Name: RbsD

Synonym: TTE0203

Alternate gene names: 20806729

Gene position: 209461-209853 (Clockwise)

Preceding gene: 20806728

Following gene: 20806730

Centisome position: 7.79

GC content: 32.06

Gene sequence:

>393_bases
ATGAAGAAAACGGAATTATTAAATAGTGAAATTTCAGAAGTAGTTGCAAGATTAGGGCACAAAGATTTATTAGTAATTGC
TGATAGCGGGTTACCTATACCAGATAATGTTAAAAGAATTGACATTGCTTTAACTAAAGGCATACCAAGCTTTAGGGATA
CATTGAATACAGTTCTTACAGAATTAGGAGTAGAGAAGGCTTATGTAGCAAGAGAGATGATAGATAAAAACAAAAAACTG
TATTTAGAATTGTCAGAGCAATTTGGCGATAAGTTAGTAATTATTGACCATGAACAGCTGAAAGAAATGTGTAAAAATGC
AAAAGCTGTGATAAGAACAGGTGAATATACTCCCTATGCAAATATTGTTTTGGAATCAGGTGTAGAGTTTTAA

Upstream 100 bases:

>100_bases
ACATTTGTTGCTGCACTTACAGTTACTAAAGAAGGTGCCCAGACTTCTTTGCCTTATAAAGAAGAAGTAGAAAAATTTAT
TAAGGAGAGGAGTTGAAACA

Downstream 100 bases:

>100_bases
AGTAGGGGGGAATAATTTTTGGAACCTATTTTACAGATGAAAGGTATTAGTAAGAAATTTGGCAATGTCAAAGTATTGGA
TAATGTTGATTTAACTTTAT

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKKTELLNSEISEVVARLGHKDLLVIADSGLPIPDNVKRIDIALTKGIPSFRDTLNTVLTELGVEKAYVAREMIDKNKKL
YLELSEQFGDKLVIIDHEQLKEMCKNAKAVIRTGEYTPYANIVLESGVEF

Sequences:

>Translated_130_residues
MKKTELLNSEISEVVARLGHKDLLVIADSGLPIPDNVKRIDIALTKGIPSFRDTLNTVLTELGVEKAYVAREMIDKNKKL
YLELSEQFGDKLVIIDHEQLKEMCKNAKAVIRTGEYTPYANIVLESGVEF
>Mature_130_residues
MKKTELLNSEISEVVARLGHKDLLVIADSGLPIPDNVKRIDIALTKGIPSFRDTLNTVLTELGVEKAYVAREMIDKNKKL
YLELSEQFGDKLVIIDHEQLKEMCKNAKAVIRTGEYTPYANIVLESGVEF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=46.0431654676259, Blast_Score=127, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_THETN (Q8RD44)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_621900.1
- HSSP:   P36946
- ProteinModelPortal:   Q8RD44
- SMR:   Q8RD44
- GeneID:   996481
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE0203
- NMPDR:   fig|273068.3.peg.814
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- BioCyc:   TTEN273068:TTE0203-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14603; Mature: 14603

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 97-97

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTELLNSEISEVVARLGHKDLLVIADSGLPIPDNVKRIDIALTKGIPSFRDTLNTVLT
CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
ELGVEKAYVAREMIDKNKKLYLELSEQFGDKLVIIDHEQLKEMCKNAKAVIRTGEYTPYA
HHCHHHHHHHHHHHCCCCEEEEEEHHHHCCEEEEECHHHHHHHHHHHHHEEECCCCCCHH
NIVLESGVEF
HHHCCCCCCC
>Mature Secondary Structure
MKKTELLNSEISEVVARLGHKDLLVIADSGLPIPDNVKRIDIALTKGIPSFRDTLNTVLT
CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
ELGVEKAYVAREMIDKNKKLYLELSEQFGDKLVIIDHEQLKEMCKNAKAVIRTGEYTPYA
HHCHHHHHHHHHHHCCCCEEEEEEHHHHCCEEEEECHHHHHHHHHHHHHEEECCCCCCHH
NIVLESGVEF
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336