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The map label for this gene is DeoR [H]

Identifier: 20806710

GI number: 20806710

Start: 187799

End: 188740

Strand: Reverse

Name: DeoR [H]

Synonym: TTE0184

Alternate gene names: 20806710

Gene position: 188740-187799 (Counterclockwise)

Preceding gene: 20806726

Following gene: 20806682

Centisome position: 7.02

GC content: 35.56

Gene sequence:

>942_bases
ATGGACAAAGATTTACATCTTTTTCAAAAAATAAGTTTGGTAGCAGAATTGTATTATACTTATGGTTTAACACAGCAGCA
AATAGCTGATAAGCTCCAGATTTCTCGGCCATGGGTTTCAAAACTTTTAAAAAAGGCAGAAGAATTAGGCCTTGTTAGAG
TAGATGTCATAACATCTACATCTGGGGTAAAAGAACTTGAAGAAGAAATCCAGAAAAAATACAGATTAAAAGGCGTAAAA
GTGATTAAAAAAGCTGTTACGTCGGATGCTGATATTGTAGAACTTGGAAAGGCAGCTGCTAATTACTTTATTTCCATACT
AGAACCTAATGACGTAATAGGCGTGTCCTGGGGTAAAACTCTTTCAGCACTTGCAAACCACTTAATACCTATTTACTACC
CTGATACTACAGTAGTACCTTTAATAGGTGGAATGGGACATACTCCATCTCTCCTTAGTAACCACATTGCCATGCAGATA
TCTTCTGCAATAAGCGGAAAATGTCTGTTACTACACGCTCCTGCTTTTGCAAGCAATAAACATGAAAAAGAAGTCTTTTT
GAAAAATCCACTTGTAAGTCAAGTAATTGAGAAAAGTGAAAATATAGATATAGCTTTGGTAGGCTTAGGAAGCCTATGGA
ATTCTACAATTCTGGAATACAACTACATCACTGTCAATGAAATAAAAGATCTAGAGAAAGTAGGAGCAATAGGAGACATT
GCCCTGCACTTTATTGATGCAAGTGGCAGAATAGTATCTCACCCCATCCATGAACGATTAATTGCAGGCAATTTATCTAA
AATACGTAAAAGTGCCAGAATCATGATGGGTGTAGCAGGTGGCCTTCATAAAAAAGAAATTGTAAAAGCTGCTTTAGTAG
GAAAATGGATAGATATACTTGTCACAGATATAGAAGTAGCTCACTATTTAATTGAAAATTAA

Upstream 100 bases:

>100_bases
TCAAGCAAAAGATAGACAAAATCTTGTAATAATTACTTGACTGTGATAAGATTAAGGAGAGCAAATTAAACAAAATTAGA
CGGTGATGAAAACAATGAAA

Downstream 100 bases:

>100_bases
ATGGGAGGAAGCCCTCCCATTTTTTAAAATAGCCTCATTATCTGCAAAATCACCCATGTCAAAGGATTAGCACCATCGCA
TATGCTGGATATTTCTGTAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDKDLHLFQKISLVAELYYTYGLTQQQIADKLQISRPWVSKLLKKAEELGLVRVDVITSTSGVKELEEEIQKKYRLKGVK
VIKKAVTSDADIVELGKAAANYFISILEPNDVIGVSWGKTLSALANHLIPIYYPDTTVVPLIGGMGHTPSLLSNHIAMQI
SSAISGKCLLLHAPAFASNKHEKEVFLKNPLVSQVIEKSENIDIALVGLGSLWNSTILEYNYITVNEIKDLEKVGAIGDI
ALHFIDASGRIVSHPIHERLIAGNLSKIRKSARIMMGVAGGLHKKEIVKAALVGKWIDILVTDIEVAHYLIEN

Sequences:

>Translated_313_residues
MDKDLHLFQKISLVAELYYTYGLTQQQIADKLQISRPWVSKLLKKAEELGLVRVDVITSTSGVKELEEEIQKKYRLKGVK
VIKKAVTSDADIVELGKAAANYFISILEPNDVIGVSWGKTLSALANHLIPIYYPDTTVVPLIGGMGHTPSLLSNHIAMQI
SSAISGKCLLLHAPAFASNKHEKEVFLKNPLVSQVIEKSENIDIALVGLGSLWNSTILEYNYITVNEIKDLEKVGAIGDI
ALHFIDASGRIVSHPIHERLIAGNLSKIRKSARIMMGVAGGLHKKEIVKAALVGKWIDILVTDIEVAHYLIEN
>Mature_313_residues
MDKDLHLFQKISLVAELYYTYGLTQQQIADKLQISRPWVSKLLKKAEELGLVRVDVITSTSGVKELEEEIQKKYRLKGVK
VIKKAVTSDADIVELGKAAANYFISILEPNDVIGVSWGKTLSALANHLIPIYYPDTTVVPLIGGMGHTPSLLSNHIAMQI
SSAISGKCLLLHAPAFASNKHEKEVFLKNPLVSQVIEKSENIDIALVGLGSLWNSTILEYNYITVNEIKDLEKVGAIGDI
ALHFIDASGRIVSHPIHERLIAGNLSKIRKSARIMMGVAGGLHKKEIVKAALVGKWIDILVTDIEVAHYLIEN

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=311, Percent_Identity=31.1897106109325, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI87082414, Length=302, Percent_Identity=25.1655629139073, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34459; Mature: 34459

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKDLHLFQKISLVAELYYTYGLTQQQIADKLQISRPWVSKLLKKAEELGLVRVDVITST
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEEECC
SGVKELEEEIQKKYRLKGVKVIKKAVTSDADIVELGKAAANYFISILEPNDVIGVSWGKT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEECCCCEEEECCCHH
LSALANHLIPIYYPDTTVVPLIGGMGHTPSLLSNHIAMQISSAISGKCLLLHAPAFASNK
HHHHHHCCEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
HEKEVFLKNPLVSQVIEKSENIDIALVGLGSLWNSTILEYNYITVNEIKDLEKVGAIGDI
CCHHHHHCCHHHHHHHHCCCCCCEEEEECCHHHCCHHEEEEEEEHHHHHHHHHHCCHHHH
ALHFIDASGRIVSHPIHERLIAGNLSKIRKSARIMMGVAGGLHKKEIVKAALVGKWIDIL
HEEEECCCCCEECCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VTDIEVAHYLIEN
HHHHHHHHHHHCC
>Mature Secondary Structure
MDKDLHLFQKISLVAELYYTYGLTQQQIADKLQISRPWVSKLLKKAEELGLVRVDVITST
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEEECC
SGVKELEEEIQKKYRLKGVKVIKKAVTSDADIVELGKAAANYFISILEPNDVIGVSWGKT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEECCCCEEEECCCHH
LSALANHLIPIYYPDTTVVPLIGGMGHTPSLLSNHIAMQISSAISGKCLLLHAPAFASNK
HHHHHHCCEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
HEKEVFLKNPLVSQVIEKSENIDIALVGLGSLWNSTILEYNYITVNEIKDLEKVGAIGDI
CCHHHHHCCHHHHHHHHCCCCCCEEEEECCHHHCCHHEEEEEEEHHHHHHHHHHCCHHHH
ALHFIDASGRIVSHPIHERLIAGNLSKIRKSARIMMGVAGGLHKKEIVKAALVGKWIDIL
HEEEECCCCCEECCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VTDIEVAHYLIEN
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]