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The map label for this gene is ylmD [H]

Identifier: 20806705

GI number: 20806705

Start: 181833

End: 182651

Strand: Direct

Name: ylmD [H]

Synonym: TTE0179

Alternate gene names: 20806705

Gene position: 181833-182651 (Clockwise)

Preceding gene: 20806704

Following gene: 20806706

Centisome position: 6.76

GC content: 38.46

Gene sequence:

>819_bases
ATGCCTTTGAAAATAGGTTTTAAAAGAAATGAAAAAAATGGAGTAGTTTTCTACACTATACCTTCTTTTGAAGAGACAGG
AGTTGTTAAGCACCTTTTTACTACGAGAATAGGTGGGGTGAGCAAGGGGAAATACGCCTCTTTAAATCTAAGCCTTAAAA
GATTTGACATCAAAGAAGAAGTTTACGAAAACTTTAAGATAATATGTGCTGTAGGAGAATTTACCTGCCAAAACATGGTT
TTTTCTGACCAGGTCCATGGTAATGTAGTGAGAAAAATCACATATGAGGATAGGGGGAAAAATTTTGGAGGAAGTGATAT
TGTAGGAGTAGATGGACTTGTGACTGACGAGAGAGAAATTCCCCTTGTTACATTTCATGCCGATTGTGTGCCTTTATTTT
TCTTAGACCCTGTTAAAAAAGTTGTCGCTCTTTCTCATGCAGGATGGAGAGGAACGGTGGCTCGTATTGGGCCAAATACT
GTAGAGGTTATGAAAAGAGAATACAATTCCAATCCCAAAGATATACTGGTAGGAATAGGACCCTCCATATACAAATGTTG
CTATGAAGTGGGGGAAGATGTGGCAGAAAGAGTAAAAGAAGCGATTGGGGACTGGAAAGAGGTTCTTGTTAAAAAGTCTG
ATGGAAAATGGCTATTAGATCTGCAGCATGCCAATTATATCGAACTTGTGAGTAGTGGGATACCGGATGAAAACATCACT
GTGAGCCAGATATGCACTTCTTGTAATCTGGAATTTTATTCTTACAGGAGAGATAAAGGCATAACAGGAAGCATGGCAGC
TTTTGTAGAACTTAAGTAA

Upstream 100 bases:

>100_bases
GGTGCTTTTTATAAAGTGGACGGACAAAGTCTTTGGGATAAAGCAAGAAAAAGAGAAAAAGGATGTGGAAGATAAAAAAG
AAGAAGAGTAGAAGGAGCGG

Downstream 100 bases:

>100_bases
GTCATTTTTATACTGCAAAGACCTCATTTTGGGTCTTTTTTATTTTATACAATTCATGCCACATTTGTGGTATACTTTTT
GCAAAGTGAAATGTAAAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MPLKIGFKRNEKNGVVFYTIPSFEETGVVKHLFTTRIGGVSKGKYASLNLSLKRFDIKEEVYENFKIICAVGEFTCQNMV
FSDQVHGNVVRKITYEDRGKNFGGSDIVGVDGLVTDEREIPLVTFHADCVPLFFLDPVKKVVALSHAGWRGTVARIGPNT
VEVMKREYNSNPKDILVGIGPSIYKCCYEVGEDVAERVKEAIGDWKEVLVKKSDGKWLLDLQHANYIELVSSGIPDENIT
VSQICTSCNLEFYSYRRDKGITGSMAAFVELK

Sequences:

>Translated_272_residues
MPLKIGFKRNEKNGVVFYTIPSFEETGVVKHLFTTRIGGVSKGKYASLNLSLKRFDIKEEVYENFKIICAVGEFTCQNMV
FSDQVHGNVVRKITYEDRGKNFGGSDIVGVDGLVTDEREIPLVTFHADCVPLFFLDPVKKVVALSHAGWRGTVARIGPNT
VEVMKREYNSNPKDILVGIGPSIYKCCYEVGEDVAERVKEAIGDWKEVLVKKSDGKWLLDLQHANYIELVSSGIPDENIT
VSQICTSCNLEFYSYRRDKGITGSMAAFVELK
>Mature_271_residues
PLKIGFKRNEKNGVVFYTIPSFEETGVVKHLFTTRIGGVSKGKYASLNLSLKRFDIKEEVYENFKIICAVGEFTCQNMVF
SDQVHGNVVRKITYEDRGKNFGGSDIVGVDGLVTDEREIPLVTFHADCVPLFFLDPVKKVVALSHAGWRGTVARIGPNTV
EVMKREYNSNPKDILVGIGPSIYKCCYEVGEDVAERVKEAIGDWKEVLVKKSDGKWLLDLQHANYIELVSSGIPDENITV
SQICTSCNLEFYSYRRDKGITGSMAAFVELK

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=251, Percent_Identity=31.0756972111554, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI190194372, Length=251, Percent_Identity=31.0756972111554, Blast_Score=109, Evalue=3e-24,
Organism=Escherichia coli, GI1788945, Length=253, Percent_Identity=33.201581027668, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 30450; Mature: 30319

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLKIGFKRNEKNGVVFYTIPSFEETGVVKHLFTTRIGGVSKGKYASLNLSLKRFDIKEE
CCEEECCEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEECCHHHH
VYENFKIICAVGEFTCQNMVFSDQVHGNVVRKITYEDRGKNFGGSDIVGVDGLVTDEREI
HHCCEEEEEEECCHHHHCCEECCCCCCCEEEEEEECCCCCCCCCCCEEECCCEEECCCCC
PLVTFHADCVPLFFLDPVKKVVALSHAGWRGTVARIGPNTVEVMKREYNSNPKDILVGIG
CEEEEECCCEEHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEECC
PSIYKCCYEVGEDVAERVKEAIGDWKEVLVKKSDGKWLLDLQHANYIELVSSGIPDENIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCHHHHHHCCCCCCCEE
VSQICTSCNLEFYSYRRDKGITGSMAAFVELK
HHHHHHHCCCEEEEEECCCCCCCCEEEEEEEC
>Mature Secondary Structure 
PLKIGFKRNEKNGVVFYTIPSFEETGVVKHLFTTRIGGVSKGKYASLNLSLKRFDIKEE
CEEECCEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEECCHHHH
VYENFKIICAVGEFTCQNMVFSDQVHGNVVRKITYEDRGKNFGGSDIVGVDGLVTDEREI
HHCCEEEEEEECCHHHHCCEECCCCCCCEEEEEEECCCCCCCCCCCEEECCCEEECCCCC
PLVTFHADCVPLFFLDPVKKVVALSHAGWRGTVARIGPNTVEVMKREYNSNPKDILVGIG
CEEEEECCCEEHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEECC
PSIYKCCYEVGEDVAERVKEAIGDWKEVLVKKSDGKWLLDLQHANYIELVSSGIPDENIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCHHHHHHCCCCCCCEE
VSQICTSCNLEFYSYRRDKGITGSMAAFVELK
HHHHHHHCCCEEEEEECCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]