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The map label for this gene is LysR [H]

Identifier: 20806611

GI number: 20806611

Start: 88813

End: 89706

Strand: Reverse

Name: LysR [H]

Synonym: TTE0082

Alternate gene names: 20806611

Gene position: 89706-88813 (Counterclockwise)

Preceding gene: 20806628

Following gene: 20806610

Centisome position: 3.34

GC content: 33.33

Gene sequence:

>894_bases
ATGAATATTGAAAACTTAAGGGCATTTTATAAAACTGTATATTACAAAAGCATTTCTTCAGCGGCAAGAGAGTTGTACCT
CTCTCAGCCAGCCATAAGTCAACAAATAAAAGCATTAGAAAAAGACTTGAAAGCAACTCTTTTAAAGCGCACCAATAGAG
GAGTCTTTCCTACACCAGCCGGAGAATTAGTTTATCAATATGCAGAAAGGATATTGAATTTGTACGACAACATGGTAAAA
GACTTAGAGTGCTGTCAAAACAACTGCATAAACAGATTAACAATTTCTGCCTGCCCTACTATTGGGCAATATGCCCTCCC
TTGTACCCTGCACGAATTCAAAAGAAGGTATAAAAACATCACAGTGCATGTAGAGCACAATTTTACACCTGAAGTGATAT
ACAACGTAAAAGAAGGAGGAATAGACATAGGCTTTATAGAAGGTTGTTATGTAGATGAAAACATTTCTTGCATTCCTTTA
GGAGATTTCAAAATGCATTTTGTAGCGAGCGGCAACTGGGAAGAAAAAAGTTTGTCAAAAAACAAATTATTGCGTTATAA
TTTTTTTATAATACATAGAAAGTGCGCTTTGCGCAAAATAATTGAAGAGACTTTACTTGCCCACGAAATTGATATAAAAA
AGTTAAAGATTGAAATGGAATTTCCTTCTATTGAATCAATTAAGTCCTCCGTGGCTGCAGGACATGGTCTTTCTATTTTG
CCTTATATAGCCATAAAAAAGGAATTATATACTAAAACCTTGTCCATAGTTGAAGTAGAAGGCATAGAATTTAACTACAG
TTATTCTTTAATATACAACAAAAAAATTTACAAAAAGTCCAAAATGGACTTCATCGATTTCATAAAAAATAACGGTAAAG
ATTTTTTCTGCTAA

Upstream 100 bases:

>100_bases
AATTCTTATGCAATATTAGTTTTACTTATAACAAACTTTGTAGTATAATAAAACTAAACGTTATATTGCGATAGCTTTTT
AACAAACAGGGGGAGTTTTT

Downstream 100 bases:

>100_bases
GGGTGATGAAAATGGTTCATGAGATTATGTGCATGGGAGAAATATGCCCTCTTCCACTTCTAAAGGCCAAAAAGAAATAC
GAAGAAATGAAAGAAGGGGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNIENLRAFYKTVYYKSISSAARELYLSQPAISQQIKALEKDLKATLLKRTNRGVFPTPAGELVYQYAERILNLYDNMVK
DLECCQNNCINRLTISACPTIGQYALPCTLHEFKRRYKNITVHVEHNFTPEVIYNVKEGGIDIGFIEGCYVDENISCIPL
GDFKMHFVASGNWEEKSLSKNKLLRYNFFIIHRKCALRKIIEETLLAHEIDIKKLKIEMEFPSIESIKSSVAAGHGLSIL
PYIAIKKELYTKTLSIVEVEGIEFNYSYSLIYNKKIYKKSKMDFIDFIKNNGKDFFC

Sequences:

>Translated_297_residues
MNIENLRAFYKTVYYKSISSAARELYLSQPAISQQIKALEKDLKATLLKRTNRGVFPTPAGELVYQYAERILNLYDNMVK
DLECCQNNCINRLTISACPTIGQYALPCTLHEFKRRYKNITVHVEHNFTPEVIYNVKEGGIDIGFIEGCYVDENISCIPL
GDFKMHFVASGNWEEKSLSKNKLLRYNFFIIHRKCALRKIIEETLLAHEIDIKKLKIEMEFPSIESIKSSVAAGHGLSIL
PYIAIKKELYTKTLSIVEVEGIEFNYSYSLIYNKKIYKKSKMDFIDFIKNNGKDFFC
>Mature_297_residues
MNIENLRAFYKTVYYKSISSAARELYLSQPAISQQIKALEKDLKATLLKRTNRGVFPTPAGELVYQYAERILNLYDNMVK
DLECCQNNCINRLTISACPTIGQYALPCTLHEFKRRYKNITVHVEHNFTPEVIYNVKEGGIDIGFIEGCYVDENISCIPL
GDFKMHFVASGNWEEKSLSKNKLLRYNFFIIHRKCALRKIIEETLLAHEIDIKKLKIEMEFPSIESIKSSVAAGHGLSIL
PYIAIKKELYTKTLSIVEVEGIEFNYSYSLIYNKKIYKKSKMDFIDFIKNNGKDFFC

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=26.551724137931, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788297, Length=250, Percent_Identity=25.2, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787879, Length=160, Percent_Identity=33.75, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI145693105, Length=267, Percent_Identity=25.0936329588015, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787601, Length=142, Percent_Identity=29.5774647887324, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790399, Length=257, Percent_Identity=25.6809338521401, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=24.7491638795987, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI157672245, Length=198, Percent_Identity=24.7474747474747, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=269, Percent_Identity=24.5353159851301, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789639, Length=266, Percent_Identity=24.0601503759398, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789204, Length=293, Percent_Identity=21.5017064846416, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081904, Length=148, Percent_Identity=28.3783783783784, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787128, Length=300, Percent_Identity=24, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787530, Length=164, Percent_Identity=26.8292682926829, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789506, Length=169, Percent_Identity=26.6272189349112, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1786401, Length=171, Percent_Identity=26.9005847953216, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87082132, Length=251, Percent_Identity=24.7011952191235, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34342; Mature: 34342

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIENLRAFYKTVYYKSISSAARELYLSQPAISQQIKALEKDLKATLLKRTNRGVFPTPA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
GELVYQYAERILNLYDNMVKDLECCQNNCINRLTISACPTIGQYALPCTLHEFKRRYKNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCE
TVHVEHNFTPEVIYNVKEGGIDIGFIEGCYVDENISCIPLGDFKMHFVASGNWEEKSLSK
EEEEECCCCHHHEEEECCCCEEEEEEECEEECCCCCEEEECCCEEEEEECCCCCHHHHCC
NKLLRYNFFIIHRKCALRKIIEETLLAHEIDIKKLKIEMEFPSIESIKSSVAAGHGLSIL
CCEEEEEEEEEEHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHCCCCCCHH
PYIAIKKELYTKTLSIVEVEGIEFNYSYSLIYNKKIYKKSKMDFIDFIKNNGKDFFC
HHHHHHHHHHHHHEEEEEEECEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNIENLRAFYKTVYYKSISSAARELYLSQPAISQQIKALEKDLKATLLKRTNRGVFPTPA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
GELVYQYAERILNLYDNMVKDLECCQNNCINRLTISACPTIGQYALPCTLHEFKRRYKNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCE
TVHVEHNFTPEVIYNVKEGGIDIGFIEGCYVDENISCIPLGDFKMHFVASGNWEEKSLSK
EEEEECCCCHHHEEEECCCCEEEEEEECEEECCCCCEEEECCCEEEEEECCCCCHHHHCC
NKLLRYNFFIIHRKCALRKIIEETLLAHEIDIKKLKIEMEFPSIESIKSSVAAGHGLSIL
CCEEEEEEEEEEHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHCCCCCCHH
PYIAIKKELYTKTLSIVEVEGIEFNYSYSLIYNKKIYKKSKMDFIDFIKNNGKDFFC
HHHHHHHHHHHHHEEEEEEECEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]