Click here to switch to the map view.

The map label for this gene is rpfG [H]

Identifier: 20806580

GI number: 20806580

Start: 51371

End: 52543

Strand: Direct

Name: rpfG [H]

Synonym: TTE0042

Alternate gene names: 20806580

Gene position: 51371-52543 (Clockwise)

Preceding gene: 20806579

Following gene: 20806581

Centisome position: 1.91

GC content: 35.55

Gene sequence:

>1173_bases
GTGAATTTGAGTTACAATAATCTATTGTCAGCTTTTTCGTTGGCTCTTGACGTACAAGAGTATAAAAACATGGGACATGC
AAGAAGAGTCGCATATGTTTCTCTCAGGATTTCAGAAATGCTTGGATTTGATGAGGAAAAAAAGAAGAAGGTCTATTACT
CTGCTCTTTTACACGATATAGGCAAAGGCGATATATATGAAGATTTTTACACAGAGGAATGGTGGAAACATGCGGACAGA
GGCAGTAAAATTGTTTTAAAATTGCCTTTTGGTGAGAATTTTTCAGAGATTATAAGGTATCACCATGAGAATTACGACGG
AAGTGGGCATTTTAAGTTAAAAGGAGATGAAATCCCATTAGGAGCTCAGATAGTTTTTATATCAGATCAGTTCGACATAA
GGTACACTTCTTTGTCTCACAAAGAGAGAGAATACAATATAAGGGAAAATTTAAAAGAATGTGTAGAGACTAATATAGGG
AAAATGTTTAACCCTTTGGTTTCAAAGGCATTACTTGAACTTATGAAGCAGGAAAAGTTCTGGCTTGATTATAAGTTTTT
TGACATAAAAAGTATACTAAATAAAATAGAACCCAAAGACACTATTCCAATTGGAATCGACGAATTGGAGAATATAGCAG
AAGCTTTTGCAGATATTATAGATACCAGAAGCCGTTTTACATACGAACATTCTAGAGGGATTTCAAACCTGGCCTATCAA
ATGGCTAAAGTATTAGGCTATGATGAAGAAACTTCTAGGAAGATAAGAGTTGCGGGGCTTTTGCATGATTTAGGGAAACT
AGCTGTACCTAATTCTATACTTGACAAACCAGGCAAGCTTACAGAAGAAGAATTTATGGTGATGAAATCTCACGTTTATT
ACACGAAGATAATTTTAAAAGAAATCGGTGGAATAGATGAAATAGCCGAATGGGCAGCAAATCACCACGAGAAACTCGAT
GGAAGTGGATACCCTGAAGGGTTGAGAGGATATGAAATGGGGGATATTGATAAGCATATTGCTGTATGCGATATATTTCA
AGCTTTGACGGAGGACAGACCCTATAGAAAGGGAATGAGCACCAAGGAGGCTATAAGAATTATTGAAAAAGAAGTTAAAA
ATGGAAAGTTGAATGAAGAGTCTCTGGAAATTTTGAAAAAAGTGGTTTTTTAA

Upstream 100 bases:

>100_bases
TTAATTTTTAGAATAATGTCGAAAATTGTATATACAGCTTTAAAAAAGTAGTGTATAATATTATCAAATGAAAATAATTA
TTAGCTAGGAGGAATAAAAT

Downstream 100 bases:

>100_bases
AGGTATACTCAGCCGTATTTTAGGAAATAATACGGTTGAGGAGGGATTATATGGGCATACTTTTTGATTACTTAAAAGAG
ATGGCTGCCACTAAAAATAT

Product: HD-GYP domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MNLSYNNLLSAFSLALDVQEYKNMGHARRVAYVSLRISEMLGFDEEKKKKVYYSALLHDIGKGDIYEDFYTEEWWKHADR
GSKIVLKLPFGENFSEIIRYHHENYDGSGHFKLKGDEIPLGAQIVFISDQFDIRYTSLSHKEREYNIRENLKECVETNIG
KMFNPLVSKALLELMKQEKFWLDYKFFDIKSILNKIEPKDTIPIGIDELENIAEAFADIIDTRSRFTYEHSRGISNLAYQ
MAKVLGYDEETSRKIRVAGLLHDLGKLAVPNSILDKPGKLTEEEFMVMKSHVYYTKIILKEIGGIDEIAEWAANHHEKLD
GSGYPEGLRGYEMGDIDKHIAVCDIFQALTEDRPYRKGMSTKEAIRIIEKEVKNGKLNEESLEILKKVVF

Sequences:

>Translated_390_residues
MNLSYNNLLSAFSLALDVQEYKNMGHARRVAYVSLRISEMLGFDEEKKKKVYYSALLHDIGKGDIYEDFYTEEWWKHADR
GSKIVLKLPFGENFSEIIRYHHENYDGSGHFKLKGDEIPLGAQIVFISDQFDIRYTSLSHKEREYNIRENLKECVETNIG
KMFNPLVSKALLELMKQEKFWLDYKFFDIKSILNKIEPKDTIPIGIDELENIAEAFADIIDTRSRFTYEHSRGISNLAYQ
MAKVLGYDEETSRKIRVAGLLHDLGKLAVPNSILDKPGKLTEEEFMVMKSHVYYTKIILKEIGGIDEIAEWAANHHEKLD
GSGYPEGLRGYEMGDIDKHIAVCDIFQALTEDRPYRKGMSTKEAIRIIEKEVKNGKLNEESLEILKKVVF
>Mature_390_residues
MNLSYNNLLSAFSLALDVQEYKNMGHARRVAYVSLRISEMLGFDEEKKKKVYYSALLHDIGKGDIYEDFYTEEWWKHADR
GSKIVLKLPFGENFSEIIRYHHENYDGSGHFKLKGDEIPLGAQIVFISDQFDIRYTSLSHKEREYNIRENLKECVETNIG
KMFNPLVSKALLELMKQEKFWLDYKFFDIKSILNKIEPKDTIPIGIDELENIAEAFADIIDTRSRFTYEHSRGISNLAYQ
MAKVLGYDEETSRKIRVAGLLHDLGKLAVPNSILDKPGKLTEEEFMVMKSHVYYTKIILKEIGGIDEIAEWAANHHEKLD
GSGYPEGLRGYEMGDIDKHIAVCDIFQALTEDRPYRKGMSTKEAIRIIEKEVKNGKLNEESLEILKKVVF

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 45146; Mature: 45146

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSYNNLLSAFSLALDVQEYKNMGHARRVAYVSLRISEMLGFDEEKKKKVYYSALLHDI
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
GKGDIYEDFYTEEWWKHADRGSKIVLKLPFGENFSEIIRYHHENYDGSGHFKLKGDEIPL
CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCC
GAQIVFISDQFDIRYTSLSHKEREYNIRENLKECVETNIGKMFNPLVSKALLELMKQEKF
CEEEEEEECCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLDYKFFDIKSILNKIEPKDTIPIGIDELENIAEAFADIIDTRSRFTYEHSRGISNLAYQ
HHEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MAKVLGYDEETSRKIRVAGLLHDLGKLAVPNSILDKPGKLTEEEFMVMKSHVYYTKIILK
HHHHHCCCCHHCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
EIGGIDEIAEWAANHHEKLDGSGYPEGLRGYEMGDIDKHIAVCDIFQALTEDRPYRKGMS
HHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCC
TKEAIRIIEKEVKNGKLNEESLEILKKVVF
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
>Mature Secondary Structure
MNLSYNNLLSAFSLALDVQEYKNMGHARRVAYVSLRISEMLGFDEEKKKKVYYSALLHDI
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
GKGDIYEDFYTEEWWKHADRGSKIVLKLPFGENFSEIIRYHHENYDGSGHFKLKGDEIPL
CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCC
GAQIVFISDQFDIRYTSLSHKEREYNIRENLKECVETNIGKMFNPLVSKALLELMKQEKF
CEEEEEEECCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLDYKFFDIKSILNKIEPKDTIPIGIDELENIAEAFADIIDTRSRFTYEHSRGISNLAYQ
HHEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MAKVLGYDEETSRKIRVAGLLHDLGKLAVPNSILDKPGKLTEEEFMVMKSHVYYTKIILK
HHHHHCCCCHHCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
EIGGIDEIAEWAANHHEKLDGSGYPEGLRGYEMGDIDKHIAVCDIFQALTEDRPYRKGMS
HHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCC
TKEAIRIIEKEVKNGKLNEESLEILKKVVF
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]