| Definition | Borrelia duttonii Ly, complete genome. |
|---|---|
| Accession | NC_011229 |
| Length | 931,674 |
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The map label for this gene is 203284646
Identifier: 203284646
GI number: 203284646
Start: 810240
End: 811742
Strand: Reverse
Name: 203284646
Synonym: BDU_756
Alternate gene names: NA
Gene position: 811742-810240 (Counterclockwise)
Preceding gene: 203284647
Following gene: 203284645
Centisome position: 87.13
GC content: 25.42
Gene sequence:
>1503_bases ATGAAAAACAAACATCAAGAGATTCTAAATTTAACCTTAAACCTTATAATAATATTGCTAATCTTTTGTAATATATCTGT TTTTACTTTCAAAATAGATCTTACTAAAAACAAAGCTTTTACGATTTCTCAAGTTACAAAAGATTTATTTTCAAATGCGA ATGAAAAAATATATATTACTTATTATAATTCTGCAAGCCTTGGCAATTATTTTGCATTCCCGGAACAAATAAAAAATTTT TTAACAAGTTTTTCTGACGCTTCAAGAGGAAAAGTGATTTATAAAGATATAGATGCTGATAAAATAGCAACTCCATTAGA ACAAATTGGAATTCCATCACAACAAATAGATTTAAGAGAAATTAATCAGCTCTCAATACTAAAAATATATTCAGGAATTG AAATCACATATGAAGGCAAACGTGAAGTACTTCCAATAGTAACAGAAATTAGCAATTTAGAATATGATCTTGCAAGCAGT CTGGACAAATTAATAAATAATACACAAAAAATATTAGGACTCGTATTTGGAGATACAAATTTAAAAGCAACACATAAAAA CTTTATAGAAATAATGCAAAAAGTTTTTAAAACAGAAGTTAAAGAAATAAATATAGAAAACGAACAATTACAAGACATCA ATGGATTATTTATTATTGGCTCTAAAGACATAAATGAAAACACATTAAAAAAAATTGATGAGTTTATCGTCAATAATGGA AGAATATTAATAACTACAAGTAAAATTGATTATAATCCTCAAAACCCATATACAACAACTTCTACTCAATCTCCAATATT TAACCTAATTGAAAGTTATGGTATTAAATATAACGAAAATATTATACTTGACAAGAGATCACCAAGTCTTTTCTTAGGAG GCAATTTCCAAACTTATTACCCATGGATCTTGATTAATAAAAATAATATCATAGATTCTAATAATCCTTTACTTAAAAAT TTTTACGATGCTATCATTCCTTGGAGTAATTCACTAAATCTTATAGAAACAAAAGAAAATAATGATGACATAAAATATTC ACCCTTATTTACAAGTTCTAAAGAATCTTGGCAAGTCAACAACGAAGAAGTTGCAAACATAGCCATGTATTCATTTAATA TACCTAAAACATTTGATAAAGAAAATCAACAAATTCTTGGATATTCAGTTGAAGGAAAAATTAAAAGTCTATATAAAGAC ATAAAATCTGCAAATTCAAAAATAGTGTTACTAGGTTCAAACATGATCTTTAGCGATTACATGTATAATGGTTCACCCTC TAATTTTGAATTTGCTGGACGAATTTCAGACTATTTAATGCAAAAAGAAGCTTTTTTTAACATTAAATCAAGAGAAGTAC GCTCAAAACTAAAATTTATAAATTCTTCAAAAGAAATGTTAAACGCAAAATTTTCATTAATAGTCATAAATTTGGTTATA CTACCTATAGCAATAATAATATTTGGACTTATTAGATTTACAAAAAAACGAAAAATCAACTAA
Upstream 100 bases:
>100_bases TTAAACTTATCAGATTTAATTTACTTCAGCACGTTTACAATTACATTTTTAATACTAAGCGCATATAGCATAAGATTAAA AAAATGGAGATAGTTATTTT
Downstream 100 bases:
>100_bases TGAAGGAGAACTTATGAATAATAAATACACATTGCTAGGAATTAAAGAGAACATAAAAATAGTAATAATCATAATATTAA TATCCACATTTTTGTTAGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 500; Mature: 500
Protein sequence:
>500_residues MKNKHQEILNLTLNLIIILLIFCNISVFTFKIDLTKNKAFTISQVTKDLFSNANEKIYITYYNSASLGNYFAFPEQIKNF LTSFSDASRGKVIYKDIDADKIATPLEQIGIPSQQIDLREINQLSILKIYSGIEITYEGKREVLPIVTEISNLEYDLASS LDKLINNTQKILGLVFGDTNLKATHKNFIEIMQKVFKTEVKEINIENEQLQDINGLFIIGSKDINENTLKKIDEFIVNNG RILITTSKIDYNPQNPYTTTSTQSPIFNLIESYGIKYNENIILDKRSPSLFLGGNFQTYYPWILINKNNIIDSNNPLLKN FYDAIIPWSNSLNLIETKENNDDIKYSPLFTSSKESWQVNNEEVANIAMYSFNIPKTFDKENQQILGYSVEGKIKSLYKD IKSANSKIVLLGSNMIFSDYMYNGSPSNFEFAGRISDYLMQKEAFFNIKSREVRSKLKFINSSKEMLNAKFSLIVINLVI LPIAIIIFGLIRFTKKRKIN
Sequences:
>Translated_500_residues MKNKHQEILNLTLNLIIILLIFCNISVFTFKIDLTKNKAFTISQVTKDLFSNANEKIYITYYNSASLGNYFAFPEQIKNF LTSFSDASRGKVIYKDIDADKIATPLEQIGIPSQQIDLREINQLSILKIYSGIEITYEGKREVLPIVTEISNLEYDLASS LDKLINNTQKILGLVFGDTNLKATHKNFIEIMQKVFKTEVKEINIENEQLQDINGLFIIGSKDINENTLKKIDEFIVNNG RILITTSKIDYNPQNPYTTTSTQSPIFNLIESYGIKYNENIILDKRSPSLFLGGNFQTYYPWILINKNNIIDSNNPLLKN FYDAIIPWSNSLNLIETKENNDDIKYSPLFTSSKESWQVNNEEVANIAMYSFNIPKTFDKENQQILGYSVEGKIKSLYKD IKSANSKIVLLGSNMIFSDYMYNGSPSNFEFAGRISDYLMQKEAFFNIKSREVRSKLKFINSSKEMLNAKFSLIVINLVI LPIAIIIFGLIRFTKKRKIN >Mature_500_residues MKNKHQEILNLTLNLIIILLIFCNISVFTFKIDLTKNKAFTISQVTKDLFSNANEKIYITYYNSASLGNYFAFPEQIKNF LTSFSDASRGKVIYKDIDADKIATPLEQIGIPSQQIDLREINQLSILKIYSGIEITYEGKREVLPIVTEISNLEYDLASS LDKLINNTQKILGLVFGDTNLKATHKNFIEIMQKVFKTEVKEINIENEQLQDINGLFIIGSKDINENTLKKIDEFIVNNG RILITTSKIDYNPQNPYTTTSTQSPIFNLIESYGIKYNENIILDKRSPSLFLGGNFQTYYPWILINKNNIIDSNNPLLKN FYDAIIPWSNSLNLIETKENNDDIKYSPLFTSSKESWQVNNEEVANIAMYSFNIPKTFDKENQQILGYSVEGKIKSLYKD IKSANSKIVLLGSNMIFSDYMYNGSPSNFEFAGRISDYLMQKEAFFNIKSREVRSKLKFINSSKEMLNAKFSLIVINLVI LPIAIIIFGLIRFTKKRKIN
Specific function: Unknown
COG id: COG3225
COG function: function code N; ABC-type uncharacterized transport system involved in gliding motility, auxiliary component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019196 [H]
Pfam domain/function: PF09822 ABC_transp_aux [H]
EC number: NA
Molecular weight: Translated: 57400; Mature: 57400
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNKHQEILNLTLNLIIILLIFCNISVFTFKIDLTKNKAFTISQVTKDLFSNANEKIYIT CCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEHHHHHHHHHCCCCCEEEEE YYNSASLGNYFAFPEQIKNFLTSFSDASRGKVIYKDIDADKIATPLEQIGIPSQQIDLRE EECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCHHHHCCCCCCCCHHH INQLSILKIYSGIEITYEGKREVLPIVTEISNLEYDLASSLDKLINNTQKILGLVFGDTN CCCEEEEEEECCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHEEEEECCCC LKATHKNFIEIMQKVFKTEVKEINIENEQLQDINGLFIIGSKDINENTLKKIDEFIVNNG CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCC RILITTSKIDYNPQNPYTTTSTQSPIFNLIESYGIKYNENIILDKRSPSLFLGGNFQTYY EEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCEECCEEEEECCCCCEEECCCCEEEE PWILINKNNIIDSNNPLLKNFYDAIIPWSNSLNLIETKENNDDIKYSPLFTSSKESWQVN CEEEEECCCEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCEECCCCCCCCCC NEEVANIAMYSFNIPKTFDKENQQILGYSVEGKIKSLYKDIKSANSKIVLLGSNMIFSDY CHHEEEEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCEEEEEE MYNGSPSNFEFAGRISDYLMQKEAFFNIKSREVRSKLKFINSSKEMLNAKFSLIVINLVI EECCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH LPIAIIIFGLIRFTKKRKIN HHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKNKHQEILNLTLNLIIILLIFCNISVFTFKIDLTKNKAFTISQVTKDLFSNANEKIYIT CCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEHHHHHHHHHCCCCCEEEEE YYNSASLGNYFAFPEQIKNFLTSFSDASRGKVIYKDIDADKIATPLEQIGIPSQQIDLRE EECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCHHHHCCCCCCCCHHH INQLSILKIYSGIEITYEGKREVLPIVTEISNLEYDLASSLDKLINNTQKILGLVFGDTN CCCEEEEEEECCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHEEEEECCCC LKATHKNFIEIMQKVFKTEVKEINIENEQLQDINGLFIIGSKDINENTLKKIDEFIVNNG CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCC RILITTSKIDYNPQNPYTTTSTQSPIFNLIESYGIKYNENIILDKRSPSLFLGGNFQTYY EEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCEECCEEEEECCCCCEEECCCCEEEE PWILINKNNIIDSNNPLLKNFYDAIIPWSNSLNLIETKENNDDIKYSPLFTSSKESWQVN CEEEEECCCEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCEECCCCCCCCCC NEEVANIAMYSFNIPKTFDKENQQILGYSVEGKIKSLYKDIKSANSKIVLLGSNMIFSDY CHHEEEEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCEEEEEE MYNGSPSNFEFAGRISDYLMQKEAFFNIKSREVRSKLKFINSSKEMLNAKFSLIVINLVI EECCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH LPIAIIIFGLIRFTKKRKIN HHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9403685 [H]