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The map label for this gene is potC [H]

Identifier: 203284538

GI number: 203284538

Start: 690436

End: 691227

Strand: Reverse

Name: potC [H]

Synonym: BDU_643

Alternate gene names: 203284538

Gene position: 691227-690436 (Counterclockwise)

Preceding gene: 203284539

Following gene: 203284537

Centisome position: 74.19

GC content: 25.13

Gene sequence:

>792_bases
ATGCTTAAAATATTTAAAAATACTTTTTTATTTTTGACACTTAGCTTTATTTATGCTCCCATAATAATTTTAATAATTTA
TTCTTTCAACGCAGGAGACAATGGATTTTTTTTTGAAGGATTTAGCTTAAAATGGTACAAAGAAGTATTTGCATCAAAAC
AAATAAAAATTGTTATATATAATACCTTGCTGGTAGCAATAATATCATCTTTCATTTCTATTATAATTGGAATTTTAGGA
GCCTACAGTATCTATAAAATAAAAAATAAAAAAATAAAAACTATACTCCTATCAATAAATAAAATACCAATAATTAATCC
TGACATTGTAACAGGAATTAGTTTAATGACATTTTATTCTTTAATTAAAATACAACTAGGATTTTCTACAATGTTAATGT
CACATATAATCTTTTCAACACCTTATATAATAATAATAATTCTACCCAAGCTATATTCTCTCTCAGACAATATCATTGAT
GCAGCTCGTGACTTAGGAGCATCAGAAACCCAAATTTTTACAAACATAATACTCCCAGAAATACTTGGAAGTATAGCAAC
AGGGGGACTTATTGCATTTACGTTATCAGTTGATGATTTTTTAATATCATTTTTTACAACAGGGCAAGGATTTAATAATT
TATCAATATTAATAAATTCTTTAACTAAAAGAGGAATCAAACCCATAATTAATGCCATTTCCTCCATACTATTTTTCGTA
ATACTTAGTCTTTTATTCATTATCAATAAATGCGTAGGAATTAAAAAATTAACGGTAGATACAGAAATTTAA

Upstream 100 bases:

>100_bases
AGGATCTGCTATATCATTTATTTTAATGATAGTCATAGTAATATTTAATTTAACAATAATTAAATTAATGCAAAAAACAG
AAAAAATATGAGGTATTAAC

Downstream 100 bases:

>100_bases
TTAAAAGGAGTTTGATTTTGAAAAAAGTTTTAATACTTATAATAATTTTAATTATTGTGTCTTGTTCCTCACAAAAAAAA
CAAAATGTTCTGAATATCCT

Product: spermidine/putrescine ABC transporter, permease protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MLKIFKNTFLFLTLSFIYAPIIILIIYSFNAGDNGFFFEGFSLKWYKEVFASKQIKIVIYNTLLVAIISSFISIIIGILG
AYSIYKIKNKKIKTILLSINKIPIINPDIVTGISLMTFYSLIKIQLGFSTMLMSHIIFSTPYIIIIILPKLYSLSDNIID
AARDLGASETQIFTNIILPEILGSIATGGLIAFTLSVDDFLISFFTTGQGFNNLSILINSLTKRGIKPIINAISSILFFV
ILSLLFIINKCVGIKKLTVDTEI

Sequences:

>Translated_263_residues
MLKIFKNTFLFLTLSFIYAPIIILIIYSFNAGDNGFFFEGFSLKWYKEVFASKQIKIVIYNTLLVAIISSFISIIIGILG
AYSIYKIKNKKIKTILLSINKIPIINPDIVTGISLMTFYSLIKIQLGFSTMLMSHIIFSTPYIIIIILPKLYSLSDNIID
AARDLGASETQIFTNIILPEILGSIATGGLIAFTLSVDDFLISFFTTGQGFNNLSILINSLTKRGIKPIINAISSILFFV
ILSLLFIINKCVGIKKLTVDTEI
>Mature_263_residues
MLKIFKNTFLFLTLSFIYAPIIILIIYSFNAGDNGFFFEGFSLKWYKEVFASKQIKIVIYNTLLVAIISSFISIIIGILG
AYSIYKIKNKKIKTILLSINKIPIINPDIVTGISLMTFYSLIKIQLGFSTMLMSHIIFSTPYIIIIILPKLYSLSDNIID
AARDLGASETQIFTNIILPEILGSIATGGLIAFTLSVDDFLISFFTTGQGFNNLSILINSLTKRGIKPIINAISSILFFV
ILSLLFIINKCVGIKKLTVDTEI

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=221, Percent_Identity=34.841628959276, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1787081, Length=239, Percent_Identity=30.1255230125523, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787714, Length=227, Percent_Identity=27.7533039647577, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788764, Length=175, Percent_Identity=25.1428571428571, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29325; Mature: 29325

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKIFKNTFLFLTLSFIYAPIIILIIYSFNAGDNGFFFEGFSLKWYKEVFASKQIKIVIY
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEHH
NTLLVAIISSFISIIIGILGAYSIYKIKNKKIKTILLSINKIPIINPDIVTGISLMTFYS
HHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHEEEEEEECCCCCCCCHHHHHHHHHHHHH
LIKIQLGFSTMLMSHIIFSTPYIIIIILPKLYSLSDNIIDAARDLGASETQIFTNIILPE
HHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHH
ILGSIATGGLIAFTLSVDDFLISFFTTGQGFNNLSILINSLTKRGIKPIINAISSILFFV
HHHHHHCCCEEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
ILSLLFIINKCVGIKKLTVDTEI
HHHHHHHHHHHCCCEEEEECCCC
>Mature Secondary Structure
MLKIFKNTFLFLTLSFIYAPIIILIIYSFNAGDNGFFFEGFSLKWYKEVFASKQIKIVIY
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEHH
NTLLVAIISSFISIIIGILGAYSIYKIKNKKIKTILLSINKIPIINPDIVTGISLMTFYS
HHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHEEEEEEECCCCCCCCHHHHHHHHHHHHH
LIKIQLGFSTMLMSHIIFSTPYIIIIILPKLYSLSDNIIDAARDLGASETQIFTNIILPE
HHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHH
ILGSIATGGLIAFTLSVDDFLISFFTTGQGFNNLSILINSLTKRGIKPIINAISSILFFV
HHHHHHCCCEEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
ILSLLFIINKCVGIKKLTVDTEI
HHHHHHHHHHHCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]