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The map label for this gene is recD [H]

Identifier: 203284531

GI number: 203284531

Start: 675544

End: 677370

Strand: Reverse

Name: recD [H]

Synonym: BDU_636

Alternate gene names: 203284531

Gene position: 677370-675544 (Counterclockwise)

Preceding gene: 203284532

Following gene: 203284529

Centisome position: 72.7

GC content: 23.04

Gene sequence:

>1827_bases
ATGAGAAATTATTTAGTCTTAAGAGAATTCCTACAAGAAGAGCAAAAAAACTACTTAAATCCAGAACTCAAAATTTATGA
AATAATTGAAATTTTAAATATAAATGTAGAACAATATTACAAATCACATTTACTTACACAAAAAATACAAAATGACAAAT
ATGAAGAACTTACCATTTTTTTAATATTCATATTTAATTACTTCTCTAAAGGACACTTAAGAGCAAATATTGATCTACTA
ATACAAGATATCCAAAACACAATCGACTGTGCTTTACTCGAACTAGAAGAAGAAAATCAACACTATCAAAAATCAACACA
CATATTACAAGAACTTACAAAATTTTCAAAAGAAACTAAAATAAAAGAAATGATATTATATTTAGAAAAAAATAATATAA
TAAAAAATTACAATCAAAATGAAAAAATAACAACTCCTTTAATATTAGAAAATAATATTTACATTTACACTCAAAAAAAT
TTTAGAGAAGAAGAAGAATTAATAAAACAAATAGACAAAAGACTTAAGAACAATAAAACAGAAATAAGTGATGATAGAAT
ACAGAACATCATGGATCACTTAAATATTACAAATTTAAGTAAAGAACAAATAAACTCAATTAAAAAAGCTTTAAAAAGTA
ATTTTTTTATATTAAGTGGTGGACCAGGAACAGGCAAAACAACAACAATTAACTATATTCTCAAAGCAATTGACATACAT
TTAGATTGTAAACAAAACGTAGCTCTTGTAGCACCAACCGGAAAAGCAAGTCAAAAATTGAAATCAAGTATTAAAGAATC
ATTTAAAAACCTTGAAACACAACATAGCACAATACAAAAACTATTAAAAATGTCATTCATAAATAAAGACGACAAATATG
ATGAGAATAATCCTTTAGAATTCGAAATAATTATAATAGATGAAGCATCTATGATAGATGCAAATACCTTTTTAAGATTA
TTAAAAGCATTAAAGATAAATACAAAAATTATAATAACAGGAGATAAAAACCAACTTCCATCAATAGCTGGAGGAAATGT
GTATTCCAGCCTTACAAAAATAAAAAAAATAAATGATGATAGTGTAGAAATACTGAAAAAAAATTTTAGAAGCAATGATG
AAATAAATTTATTAGCCAAAGCAATATATAAAGAAGATATGGACTTAATTGAAACTCAATTTAATGATAGCAAAAACATA
ATTCTAAAAAACCTAAATAAAATAAATATTGAAAATGAATTACTAAAACATACAAAAAAATTATACAATAACATTCCCAA
TTTCAATCTTAACTCGTTAAATGACAAAGAAATTGAATCAATAATTCATACACTGCTTAGTAACACAATTTTATGTTCAA
AAAATCTTGGAAAATTTGGCACACAAAAAATAAATGAAATAATTAAATTTTATTTAAAAAAATTATATGGAAATTTAATT
GGACAAATAATTTTAATTACTCAAAATGATTATAAAAATGACCTATTTAATGGGGAGAGAGGAATACTTTTTAAAGAAAA
TTCTAAAATTTATGCTCTATTTAAAAGAGAAAATGAAAAATACAAAAAAATAAACTTTAACTTAATAAATAAATATGAGC
TGAGCTTTGCAACGACAATACATAAAAGTCAGGGCTCTGAATATCAACACATACAAATTATAATAGAAAATCACCCTTTC
TTAACAAAAGAATTACTCTACACTGCAATAACAAGAGCTAGAGAAAGTATAGAAATAATATCAAACAAAGAGATAATTAA
AAATGTCAGTTTAAAGAAAATCAATAGAGACTCCAAAATTACAGAATACATAAACACGTTAAAATAA

Upstream 100 bases:

>100_bases
CACAAGATCAAATACAAAATGGAATTTACTCTACCATACCAAATTTTCAAGAAATAGAATTAGAACAAATATATTTACAA
CTAAAACATTAAAGGAACAT

Downstream 100 bases:

>100_bases
ATTGACAAATAAAAAGAAAAACAATATAATCATAAGGTATTGCATTTGGGGGTGTAGTTCAGCTGGTTAGAATGCCTGCC
TGTCACGCAGGAGGTCGCGG

Product: exodeoxyribonuclease V, alpha chain

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 608; Mature: 608

Protein sequence:

>608_residues
MRNYLVLREFLQEEQKNYLNPELKIYEIIEILNINVEQYYKSHLLTQKIQNDKYEELTIFLIFIFNYFSKGHLRANIDLL
IQDIQNTIDCALLELEEENQHYQKSTHILQELTKFSKETKIKEMILYLEKNNIIKNYNQNEKITTPLILENNIYIYTQKN
FREEEELIKQIDKRLKNNKTEISDDRIQNIMDHLNITNLSKEQINSIKKALKSNFFILSGGPGTGKTTTINYILKAIDIH
LDCKQNVALVAPTGKASQKLKSSIKESFKNLETQHSTIQKLLKMSFINKDDKYDENNPLEFEIIIIDEASMIDANTFLRL
LKALKINTKIIITGDKNQLPSIAGGNVYSSLTKIKKINDDSVEILKKNFRSNDEINLLAKAIYKEDMDLIETQFNDSKNI
ILKNLNKINIENELLKHTKKLYNNIPNFNLNSLNDKEIESIIHTLLSNTILCSKNLGKFGTQKINEIIKFYLKKLYGNLI
GQIILITQNDYKNDLFNGERGILFKENSKIYALFKRENEKYKKINFNLINKYELSFATTIHKSQGSEYQHIQIIIENHPF
LTKELLYTAITRARESIEIISNKEIIKNVSLKKINRDSKITEYINTLK

Sequences:

>Translated_608_residues
MRNYLVLREFLQEEQKNYLNPELKIYEIIEILNINVEQYYKSHLLTQKIQNDKYEELTIFLIFIFNYFSKGHLRANIDLL
IQDIQNTIDCALLELEEENQHYQKSTHILQELTKFSKETKIKEMILYLEKNNIIKNYNQNEKITTPLILENNIYIYTQKN
FREEEELIKQIDKRLKNNKTEISDDRIQNIMDHLNITNLSKEQINSIKKALKSNFFILSGGPGTGKTTTINYILKAIDIH
LDCKQNVALVAPTGKASQKLKSSIKESFKNLETQHSTIQKLLKMSFINKDDKYDENNPLEFEIIIIDEASMIDANTFLRL
LKALKINTKIIITGDKNQLPSIAGGNVYSSLTKIKKINDDSVEILKKNFRSNDEINLLAKAIYKEDMDLIETQFNDSKNI
ILKNLNKINIENELLKHTKKLYNNIPNFNLNSLNDKEIESIIHTLLSNTILCSKNLGKFGTQKINEIIKFYLKKLYGNLI
GQIILITQNDYKNDLFNGERGILFKENSKIYALFKRENEKYKKINFNLINKYELSFATTIHKSQGSEYQHIQIIIENHPF
LTKELLYTAITRARESIEIISNKEIIKNVSLKKINRDSKITEYINTLK
>Mature_608_residues
MRNYLVLREFLQEEQKNYLNPELKIYEIIEILNINVEQYYKSHLLTQKIQNDKYEELTIFLIFIFNYFSKGHLRANIDLL
IQDIQNTIDCALLELEEENQHYQKSTHILQELTKFSKETKIKEMILYLEKNNIIKNYNQNEKITTPLILENNIYIYTQKN
FREEEELIKQIDKRLKNNKTEISDDRIQNIMDHLNITNLSKEQINSIKKALKSNFFILSGGPGTGKTTTINYILKAIDIH
LDCKQNVALVAPTGKASQKLKSSIKESFKNLETQHSTIQKLLKMSFINKDDKYDENNPLEFEIIIIDEASMIDANTFLRL
LKALKINTKIIITGDKNQLPSIAGGNVYSSLTKIKKINDDSVEILKKNFRSNDEINLLAKAIYKEDMDLIETQFNDSKNI
ILKNLNKINIENELLKHTKKLYNNIPNFNLNSLNDKEIESIIHTLLSNTILCSKNLGKFGTQKINEIIKFYLKKLYGNLI
GQIILITQNDYKNDLFNGERGILFKENSKIYALFKRENEKYKKINFNLINKYELSFATTIHKSQGSEYQHIQIIIENHPF
LTKELLYTAITRARESIEIISNKEIIKNVSLKKINRDSKITEYINTLK

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=421, Percent_Identity=25.6532066508314, Blast_Score=155, Evalue=6e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 71188; Mature: 71188

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNYLVLREFLQEEQKNYLNPELKIYEIIEILNINVEQYYKSHLLTQKIQNDKYEELTIF
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
LIFIFNYFSKGHLRANIDLLIQDIQNTIDCALLELEEENQHYQKSTHILQELTKFSKETK
HHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH
IKEMILYLEKNNIIKNYNQNEKITTPLILENNIYIYTQKNFREEEELIKQIDKRLKNNKT
HHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCCC
EISDDRIQNIMDHLNITNLSKEQINSIKKALKSNFFILSGGPGTGKTTTINYILKAIDIH
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHEE
LDCKQNVALVAPTGKASQKLKSSIKESFKNLETQHSTIQKLLKMSFINKDDKYDENNPLE
EECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
FEIIIIDEASMIDANTFLRLLKALKINTKIIITGDKNQLPSIAGGNVYSSLTKIKKINDD
EEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCH
SVEILKKNFRSNDEINLLAKAIYKEDMDLIETQFNDSKNIILKNLNKINIENELLKHTKK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHH
LYNNIPNFNLNSLNDKEIESIIHTLLSNTILCSKNLGKFGTQKINEIIKFYLKKLYGNLI
HHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
GQIILITQNDYKNDLFNGERGILFKENSKIYALFKRENEKYKKINFNLINKYELSFATTI
CEEEEEECCCCCHHHCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEEEEEEEEHHHEEE
HKSQGSEYQHIQIIIENHPFLTKELLYTAITRARESIEIISNKEIIKNVSLKKINRDSKI
ECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCHHH
TEYINTLK
HHHHHHCC
>Mature Secondary Structure
MRNYLVLREFLQEEQKNYLNPELKIYEIIEILNINVEQYYKSHLLTQKIQNDKYEELTIF
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
LIFIFNYFSKGHLRANIDLLIQDIQNTIDCALLELEEENQHYQKSTHILQELTKFSKETK
HHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH
IKEMILYLEKNNIIKNYNQNEKITTPLILENNIYIYTQKNFREEEELIKQIDKRLKNNKT
HHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCCC
EISDDRIQNIMDHLNITNLSKEQINSIKKALKSNFFILSGGPGTGKTTTINYILKAIDIH
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHEE
LDCKQNVALVAPTGKASQKLKSSIKESFKNLETQHSTIQKLLKMSFINKDDKYDENNPLE
EECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
FEIIIIDEASMIDANTFLRLLKALKINTKIIITGDKNQLPSIAGGNVYSSLTKIKKINDD
EEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCH
SVEILKKNFRSNDEINLLAKAIYKEDMDLIETQFNDSKNIILKNLNKINIENELLKHTKK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHH
LYNNIPNFNLNSLNDKEIESIIHTLLSNTILCSKNLGKFGTQKINEIIKFYLKKLYGNLI
HHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
GQIILITQNDYKNDLFNGERGILFKENSKIYALFKRENEKYKKINFNLINKYELSFATTI
CEEEEEECCCCCHHHCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEEEEEEEEHHHEEE
HKSQGSEYQHIQIIIENHPFLTKELLYTAITRARESIEIISNKEIIKNVSLKKINRDSKI
ECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCHHH
TEYINTLK
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]