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The map label for this gene is yodJ [H]

Identifier: 203284488

GI number: 203284488

Start: 615310

End: 616152

Strand: Reverse

Name: yodJ [H]

Synonym: BDU_585

Alternate gene names: 203284488

Gene position: 616152-615310 (Counterclockwise)

Preceding gene: 203284491

Following gene: 203284478

Centisome position: 66.13

GC content: 23.13

Gene sequence:

>843_bases
ATGTTAAACTGGATAATGCAATATAATTATATATTAATGATATCTTTTAATATTTTTTCACTAATTTTTTTAGTTAGTAA
TTTAATTAATAACCCTTCTTTAGAAGCAAATACAATATCAAAACAAGATTTTCAAACTTTACTTAATATCATAAAAACTC
TAGATCAAGTTCATCAAAAACAAATAAAAGAACAACCTATCTCATTTATTCAAGAACTAAAACCATTACTTGAAGCGGAA
AAAAACAATTTACTAATACTTGTAAATAAAAAAATCCCTATTCCTAAAGGATATAACCCAACTGACTTGGTTTATTTAAA
AAATTTCAAAGAACTTAAAAACATTGGCAAAGAAAACCTCAAATTAAGAAAAATATTAATAAATGACTTAATTGATCTTA
TAAATGCAGGCAAAAAAAATGGTTTACAAATAAAAATAATATCAGCATATAGAACAAAAGAATACCAAAATTTTTTATTC
AAATATAATGTAAAAACATATGGCATAAAGTCAGCACAGATACAATCAGCAATTTCTAATCACTCACAACACCAATTAGG
AACAACAATAGATTTTATCAATACAGATGATAACCTATTAAATACAAAAGAAGGAAAATGGCTTTATGAAAACTCATCAA
AATATGGATTCTCATTATCATATCCAAAAAAACATGAAAAAGAAACTGGTTATAAAGCAGAACCTTGGCATTACATGTAC
ATTGGAAAACAAGCATGTGCCCTACAAAAAAAATATTTTAATAATTTACAATATAAATTTCTTGAATTTTGGAATAATAA
CAAAAAAGAACTCTTAAAGTTAATTCAAAAATATAAAAATTAA

Upstream 100 bases:

>100_bases
ACACCAAATCTTACTTAATTTAGCATTTATAAAAACAAAATTAAAAACTAAAACTAATACGTTATTCATCAATAACAAAA
GCTCAACATAATATAACTAT

Downstream 100 bases:

>100_bases
TATTAACTACCCTTAGAAACTGAACTTAAATATGATACTAAAAGGCTATCTAGCAACTTAACATCTGATTTATCATAAAA
ATCTCTATTTGAACAAAATA

Product: carboxypeptidase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MLNWIMQYNYILMISFNIFSLIFLVSNLINNPSLEANTISKQDFQTLLNIIKTLDQVHQKQIKEQPISFIQELKPLLEAE
KNNLLILVNKKIPIPKGYNPTDLVYLKNFKELKNIGKENLKLRKILINDLIDLINAGKKNGLQIKIISAYRTKEYQNFLF
KYNVKTYGIKSAQIQSAISNHSQHQLGTTIDFINTDDNLLNTKEGKWLYENSSKYGFSLSYPKKHEKETGYKAEPWHYMY
IGKQACALQKKYFNNLQYKFLEFWNNNKKELLKLIQKYKN

Sequences:

>Translated_280_residues
MLNWIMQYNYILMISFNIFSLIFLVSNLINNPSLEANTISKQDFQTLLNIIKTLDQVHQKQIKEQPISFIQELKPLLEAE
KNNLLILVNKKIPIPKGYNPTDLVYLKNFKELKNIGKENLKLRKILINDLIDLINAGKKNGLQIKIISAYRTKEYQNFLF
KYNVKTYGIKSAQIQSAISNHSQHQLGTTIDFINTDDNLLNTKEGKWLYENSSKYGFSLSYPKKHEKETGYKAEPWHYMY
IGKQACALQKKYFNNLQYKFLEFWNNNKKELLKLIQKYKN
>Mature_280_residues
MLNWIMQYNYILMISFNIFSLIFLVSNLINNPSLEANTISKQDFQTLLNIIKTLDQVHQKQIKEQPISFIQELKPLLEAE
KNNLLILVNKKIPIPKGYNPTDLVYLKNFKELKNIGKENLKLRKILINDLIDLINAGKKNGLQIKIISAYRTKEYQNFLF
KYNVKTYGIKSAQIQSAISNHSQHQLGTTIDFINTDDNLLNTKEGKWLYENSSKYGFSLSYPKKHEKETGYKAEPWHYMY
IGKQACALQKKYFNNLQYKFLEFWNNNKKELLKLIQKYKN

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 33018; Mature: 33018

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNWIMQYNYILMISFNIFSLIFLVSNLINNPSLEANTISKQDFQTLLNIIKTLDQVHQK
CCCCCEECCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QIKEQPISFIQELKPLLEAEKNNLLILVNKKIPIPKGYNPTDLVYLKNFKELKNIGKENL
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHCCHHHH
KLRKILINDLIDLINAGKKNGLQIKIISAYRTKEYQNFLFKYNVKTYGIKSAQIQSAISN
HHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHEEECCHHCCCCHHHHHHHHHC
HSQHQLGTTIDFINTDDNLLNTKEGKWLYENSSKYGFSLSYPKKHEKETGYKAEPWHYMY
CCHHHCCCEEEEECCCCCCCCCCCCCEEEECCCCCCEEECCCCCHHHCCCCCCCCEEEEE
IGKQACALQKKYFNNLQYKFLEFWNNNKKELLKLIQKYKN
ECHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MLNWIMQYNYILMISFNIFSLIFLVSNLINNPSLEANTISKQDFQTLLNIIKTLDQVHQK
CCCCCEECCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QIKEQPISFIQELKPLLEAEKNNLLILVNKKIPIPKGYNPTDLVYLKNFKELKNIGKENL
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHCCHHHH
KLRKILINDLIDLINAGKKNGLQIKIISAYRTKEYQNFLFKYNVKTYGIKSAQIQSAISN
HHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHEEECCHHCCCCHHHHHHHHHC
HSQHQLGTTIDFINTDDNLLNTKEGKWLYENSSKYGFSLSYPKKHEKETGYKAEPWHYMY
CCHHHCCCEEEEECCCCCCCCCCCCCEEEECCCCCCEEECCCCCHHHCCCCCCCCEEEEE
IGKQACALQKKYFNNLQYKFLEFWNNNKKELLKLIQKYKN
ECHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]