Click here to switch to the map view.

The map label for this gene is yacO [C]

Identifier: 203284425

GI number: 203284425

Start: 540970

End: 541704

Strand: Reverse

Name: yacO [C]

Synonym: BDU_518

Alternate gene names: 203284425

Gene position: 541704-540970 (Counterclockwise)

Preceding gene: 203284426

Following gene: 203284417

Centisome position: 58.14

GC content: 25.71

Gene sequence:

>735_bases
ATGTATATTACACACGCTAATTCAATAATTGAAAGCATCAAAAATAATAAAGGACTTGAACTATATATTTCAAAAACAAG
TCCAAAAACCATAAGTATTGAACAATTAGCAAGACAACATAACATTAAGATTATCAAAATAAATGATCTTACAAAAATAC
TTGGCAATAACAATCATAGGGGTTTTGCATTAAAATTACAAAATCTAAAAGATTATAATACAATCAATAAAAATAAAAAC
TTAGAAGAATACTTAAAAGAATTTCAACATAAAAATAATATACTTATTTTAATACTTGATAGTATAGAAGATCCTCAAAA
TTTTGGAGCAATTCTTAGAACCGCAGAACAATTCAATATTGATCTTGTAATTACTAACCAGAGAAAAAGCGTAAAAGACA
ATGAAACTGTCTTACGCACAAGCTCTGGAGCAAGTCAATATGTAAACAAATTAACAGTTCCAAATATAAACAATGTAATT
AGATATTTAAAAAAACAGGGATTTTGGATATATGCCAGTGATATAAAAGGACAAGCAATAAATAACACTAAAATAACTGA
CAACAAAATTGCATTAATTATGGGCAATGAAGGCAAAGGAATACATAACCTACTAAAAAATAATTCTGATTTTTTAATTA
AAATACCAACTAAGGGAAAAATAGATTCTCTTAACGTATCAGTCTCAACAGGAATTTTAATATTTGAAATAAAAAGGCAA
CTTAACTTGCTTTAG

Upstream 100 bases:

>100_bases
AAAACTCCTAAAAATCTAAATAATAATGCTATTAAACTACTAGAAACTCTAAGCAAGGAAGTCAAAGACATTGATGAAGT
TACCTTAAATAAAATTTAAT

Downstream 100 bases:

>100_bases
TTTATTCTATCCAATTAAATAAACTCACTTATCCCAAAAAATTTCTAACTTCCACAGAAGCCAAAAACCCTTCAGCAGCA
GCCGTAATGGCTTGTGCATA

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MYITHANSIIESIKNNKGLELYISKTSPKTISIEQLARQHNIKIIKINDLTKILGNNNHRGFALKLQNLKDYNTINKNKN
LEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNIDLVITNQRKSVKDNETVLRTSSGASQYVNKLTVPNINNVI
RYLKKQGFWIYASDIKGQAINNTKITDNKIALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQ
LNLL

Sequences:

>Translated_244_residues
MYITHANSIIESIKNNKGLELYISKTSPKTISIEQLARQHNIKIIKINDLTKILGNNNHRGFALKLQNLKDYNTINKNKN
LEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNIDLVITNQRKSVKDNETVLRTSSGASQYVNKLTVPNINNVI
RYLKKQGFWIYASDIKGQAINNTKITDNKIALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQ
LNLL
>Mature_244_residues
MYITHANSIIESIKNNKGLELYISKTSPKTISIEQLARQHNIKIIKINDLTKILGNNNHRGFALKLQNLKDYNTINKNKN
LEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNIDLVITNQRKSVKDNETVLRTSSGASQYVNKLTVPNINNVI
RYLKKQGFWIYASDIKGQAINNTKITDNKIALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQ
LNLL

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=162, Percent_Identity=30.2469135802469, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI110825988, Length=149, Percent_Identity=29.5302013422819, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1790623, Length=149, Percent_Identity=38.255033557047, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1788935, Length=200, Percent_Identity=25, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1790083, Length=147, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6324775, Length=164, Percent_Identity=31.7073170731707, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27755; Mature: 27755

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYITHANSIIESIKNNKGLELYISKTSPKTISIEQLARQHNIKIIKINDLTKILGNNNHR
CEEECHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHCEEEEEECCHHHHHCCCCCC
GFALKLQNLKDYNTINKNKNLEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNI
EEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCEE
DLVITNQRKSVKDNETVLRTSSGASQYVNKLTVPNINNVIRYLKKQGFWIYASDIKGQAI
EEEEECCCCCCCCCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCEE
NNTKITDNKIALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQ
CCCEECCCEEEEEECCCCCHHHHHHCCCCCEEEECCCCCCEEEEEEEEECCEEEEEEEHH
LNLL
HCCC
>Mature Secondary Structure
MYITHANSIIESIKNNKGLELYISKTSPKTISIEQLARQHNIKIIKINDLTKILGNNNHR
CEEECHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHCEEEEEECCHHHHHCCCCCC
GFALKLQNLKDYNTINKNKNLEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNI
EEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCEE
DLVITNQRKSVKDNETVLRTSSGASQYVNKLTVPNINNVIRYLKKQGFWIYASDIKGQAI
EEEEECCCCCCCCCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCEE
NNTKITDNKIALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQ
CCCEECCCEEEEEECCCCCHHHHHHCCCCCEEEECCCCCCEEEEEEEEECCEEEEEEEHH
LNLL
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]