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The map label for this gene is fliR [H]

Identifier: 203284194

GI number: 203284194

Start: 301321

End: 302109

Strand: Reverse

Name: fliR [H]

Synonym: BDU_276

Alternate gene names: 203284194

Gene position: 302109-301321 (Counterclockwise)

Preceding gene: 203284195

Following gene: 203284193

Centisome position: 32.43

GC content: 23.19

Gene sequence:

>789_bases
ATGAATATGGATTTTTTGATTTTAAAGTCTTTTGTGGTTTTACCTATTTTTATTAGAATTTTTATTTTTTTAAGATTTTC
ACCTTTTTTTTCGACTATTAAAATGGGTTATTTAAATTTTTTCTTTTCATTGATTTTGTCCATTATTGTTGTAGATAAGG
TAAATGTTGTCTATCCTTTGAATAATTTGACTGCATTTGTATTAATATTGCTAGGAGAGGCTATTTTAGGACTTATTCAA
GCTTTTTTTGTAAGTATTATTTTTAATGTGTTTCATTTACTTGGTTTTTTTTTCTCAAATCAGATGGGACTTGCTTATGC
AAATATTTTTGATGTTTTTGCAGAAGAGGATAATTTGGTAATATCTCAAATATTTACTTATCTTTTTTTGATTGTGTTTT
TATCAAATGATTTTTTATTTCGTTTTTTAGTTATTGGGGTTTATGATTCTGTCTTAAATGTTAGAGTTGAGAATATGGTT
AATATAAAGAATTATGAATTTATAAAGTTAGTATTTTATTCTTTTGCTATTCTTTTTGAAAAATCTTTAATAATGTCTCT
TCCAATATTAGGAGTTCTTTTACTTTTATATTTAATTTTAGGTATAATTTCCAAAACATCTCCTCAAATTAATTTATTAA
TGATTAGTTTTGCGATTTCTTTGGGATTGGGATTAATTGTTTTATATATTACTTTTCCAAGTTTTGTGATATCTGTTAAA
AGAGTAATTGAACTTAGCTTAGAATCTATGCGTAATGCATTAAATTTATTTTCTGAGACTTTAAAATGA

Upstream 100 bases:

>100_bases
GTTCTTGTGATATTTGGACCTTGGATTTTAAAGAAACTTATGCAATTTACGTTTTTAGTTTTTAATCAGATACAAAATAT
GTAAATGTCTGGATTAATCT

Downstream 100 bases:

>100_bases
ATACTAGAGATGAATTTTTAAATAAAAGTTGGTATATACCCCTTAATTTTTTTGCCTCAGAGGATGAGGGCAGAACTGAA
GTTCCTACTGAGCAAAGAAA

Product: flagellar biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MNMDFLILKSFVVLPIFIRIFIFLRFSPFFSTIKMGYLNFFFSLILSIIVVDKVNVVYPLNNLTAFVLILLGEAILGLIQ
AFFVSIIFNVFHLLGFFFSNQMGLAYANIFDVFAEEDNLVISQIFTYLFLIVFLSNDFLFRFLVIGVYDSVLNVRVENMV
NIKNYEFIKLVFYSFAILFEKSLIMSLPILGVLLLLYLILGIISKTSPQINLLMISFAISLGLGLIVLYITFPSFVISVK
RVIELSLESMRNALNLFSETLK

Sequences:

>Translated_262_residues
MNMDFLILKSFVVLPIFIRIFIFLRFSPFFSTIKMGYLNFFFSLILSIIVVDKVNVVYPLNNLTAFVLILLGEAILGLIQ
AFFVSIIFNVFHLLGFFFSNQMGLAYANIFDVFAEEDNLVISQIFTYLFLIVFLSNDFLFRFLVIGVYDSVLNVRVENMV
NIKNYEFIKLVFYSFAILFEKSLIMSLPILGVLLLLYLILGIISKTSPQINLLMISFAISLGLGLIVLYITFPSFVISVK
RVIELSLESMRNALNLFSETLK
>Mature_262_residues
MNMDFLILKSFVVLPIFIRIFIFLRFSPFFSTIKMGYLNFFFSLILSIIVVDKVNVVYPLNNLTAFVLILLGEAILGLIQ
AFFVSIIFNVFHLLGFFFSNQMGLAYANIFDVFAEEDNLVISQIFTYLFLIVFLSNDFLFRFLVIGVYDSVLNVRVENMV
NIKNYEFIKLVFYSFAILFEKSLIMSLPILGVLLLLYLILGIISKTSPQINLLMISFAISLGLGLIVLYITFPSFVISVK
RVIELSLESMRNALNLFSETLK

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 30067; Mature: 30067

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNMDFLILKSFVVLPIFIRIFIFLRFSPFFSTIKMGYLNFFFSLILSIIVVDKVNVVYPL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEH
NNLTAFVLILLGEAILGLIQAFFVSIIFNVFHLLGFFFSNQMGLAYANIFDVFAEEDNLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH
ISQIFTYLFLIVFLSNDFLFRFLVIGVYDSVLNVRVENMVNIKNYEFIKLVFYSFAILFE
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
KSLIMSLPILGVLLLLYLILGIISKTSPQINLLMISFAISLGLGLIVLYITFPSFVISVK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVIELSLESMRNALNLFSETLK
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]