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The map label for this gene is yebA [C]

Identifier: 203284183

GI number: 203284183

Start: 289404

End: 290672

Strand: Reverse

Name: yebA [C]

Synonym: BDU_265

Alternate gene names: 203284183

Gene position: 290672-289404 (Counterclockwise)

Preceding gene: 203284185

Following gene: 203284181

Centisome position: 31.2

GC content: 27.27

Gene sequence:

>1269_bases
ATGATTATACCAAAAAAAGATCAGAATGTATTTAAAAGGAAGAAAAATTTTTTGTTTAATAGGGCAGTTAAAGGTGATTT
TGAGTTGAGAGATTTTGGTAATATTCGTAATTTTAATAAAAAAAAACGGAAAAGCTGTTTTTGTTTTTTTAATGTTTTTA
CTAAATTTTTTTATGTATTTAAATTGTTGTTTATAACTTTGTTTGGGCAGATTATGGATATTAATAATTATAAGTGTGGA
TATTCTTCTAAGAAGGTTACATTTAAAATGGTTAATACTTATGATGTAAATTTGTTTTATAGTGTTATTTATAATTTTAT
TTTTAAAATTAATGTTTTAGTTTTTGTCTTAATATTAATCTTTTATTTAAATATTTTTGCGTATTATGGTTCATATGTTT
TTTTAAACAAATTAAGCTTTCCCAAAGATTATTTTATTGATACTTTTTTGTATTATAGTGATCAAGATTTAAGTCAGATT
AATAATTATTTCTTTGGTTTAGATGCAAGCAATTATAATGCTACTACTATAAGGAAGCCTTTTGTTTTAAAGGTTGTTGA
ACATAAAATTAAGCCAGGAGAGACACTTTCTCATATTGCATCTCGGTATAATATTACTAGTGAAACTTTAATTTCTTATA
ATGATATTAAAGATGTAAGAAATATTAAGCCCAATGTTATTATTAATGTTCCTAATATGAAGGGAATTCTTTATACTGTT
GGTAAAAATGATTCCCTCTCATCAATCGCAAAGAAATATAAGATACCTAAAGTGGATATTCTTGATGCTAATAATCTTGA
TAATGAGGTTTTGTCTTTAGGTCAGAAGTTGTTTGTTCCTGGTGGAAAGATGTCTAAAGATTTACTTAGAAATGCTTTAG
GTGAGACCTTTTTGTTTCCAACACGGGGGATTATTACATCAGGTTATGGTTATCGTCCTGATCCTTTTACTAAAACTATT
AGTTTTCATAATGGAATTGATATTGCAAATGTTGCTAATACACCTGTTGTTGCTACAAAGGAAGGTATTGTTGTAACAGC
GGGATTTAGTGTTGGAGGATATGGAAAATATATTGTTATTGCGCATAATAATGGTTTTCAAACTCTTTATGCGCATTTAG
GTTCATTTGCAGTTAAAGTTGGGGATAGAGTATCTAGAGGACAAATGATAGGACGTATGGGAAGCACTGGATACAGTACG
GGAAATCATTTACATTTTACTATTTTTAAAGATGGTAAAACGAGTAATCCTATGAAATATCTCAGATAA

Upstream 100 bases:

>100_bases
GAATTAATACTTGTTTGTGGATTTGTAACATTTCTTAAATTTCCATTTGAGTTTTTATCGAATTGAAATTTCTAGTGTAT
AGTATATAATAAGGCATGAT

Downstream 100 bases:

>100_bases
GCTATATGTATTTTGATATGTCCAATGTTCTCAGTATTTGTGTAAGTTTTTTTCCTTCTATTAGGTCAATTAATCTGCCT
TCAATAATTTGTTTAGCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MIIPKKDQNVFKRKKNFLFNRAVKGDFELRDFGNIRNFNKKKRKSCFCFFNVFTKFFYVFKLLFITLFGQIMDINNYKCG
YSSKKVTFKMVNTYDVNLFYSVIYNFIFKINVLVFVLILIFYLNIFAYYGSYVFLNKLSFPKDYFIDTFLYYSDQDLSQI
NNYFFGLDASNYNATTIRKPFVLKVVEHKIKPGETLSHIASRYNITSETLISYNDIKDVRNIKPNVIINVPNMKGILYTV
GKNDSLSSIAKKYKIPKVDILDANNLDNEVLSLGQKLFVPGGKMSKDLLRNALGETFLFPTRGIITSGYGYRPDPFTKTI
SFHNGIDIANVANTPVVATKEGIVVTAGFSVGGYGKYIVIAHNNGFQTLYAHLGSFAVKVGDRVSRGQMIGRMGSTGYST
GNHLHFTIFKDGKTSNPMKYLR

Sequences:

>Translated_422_residues
MIIPKKDQNVFKRKKNFLFNRAVKGDFELRDFGNIRNFNKKKRKSCFCFFNVFTKFFYVFKLLFITLFGQIMDINNYKCG
YSSKKVTFKMVNTYDVNLFYSVIYNFIFKINVLVFVLILIFYLNIFAYYGSYVFLNKLSFPKDYFIDTFLYYSDQDLSQI
NNYFFGLDASNYNATTIRKPFVLKVVEHKIKPGETLSHIASRYNITSETLISYNDIKDVRNIKPNVIINVPNMKGILYTV
GKNDSLSSIAKKYKIPKVDILDANNLDNEVLSLGQKLFVPGGKMSKDLLRNALGETFLFPTRGIITSGYGYRPDPFTKTI
SFHNGIDIANVANTPVVATKEGIVVTAGFSVGGYGKYIVIAHNNGFQTLYAHLGSFAVKVGDRVSRGQMIGRMGSTGYST
GNHLHFTIFKDGKTSNPMKYLR
>Mature_422_residues
MIIPKKDQNVFKRKKNFLFNRAVKGDFELRDFGNIRNFNKKKRKSCFCFFNVFTKFFYVFKLLFITLFGQIMDINNYKCG
YSSKKVTFKMVNTYDVNLFYSVIYNFIFKINVLVFVLILIFYLNIFAYYGSYVFLNKLSFPKDYFIDTFLYYSDQDLSQI
NNYFFGLDASNYNATTIRKPFVLKVVEHKIKPGETLSHIASRYNITSETLISYNDIKDVRNIKPNVIINVPNMKGILYTV
GKNDSLSSIAKKYKIPKVDILDANNLDNEVLSLGQKLFVPGGKMSKDLLRNALGETFLFPTRGIITSGYGYRPDPFTKTI
SFHNGIDIANVANTPVVATKEGIVVTAGFSVGGYGKYIVIAHNNGFQTLYAHLGSFAVKVGDRVSRGQMIGRMGSTGYST
GNHLHFTIFKDGKTSNPMKYLR

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=107, Percent_Identity=39.2523364485981, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1789099, Length=125, Percent_Identity=37.6, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87082174, Length=205, Percent_Identity=29.2682926829268, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48239; Mature: 48239

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIPKKDQNVFKRKKNFLFNRAVKGDFELRDFGNIRNFNKKKRKSCFCFFNVFTKFFYVF
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KLLFITLFGQIMDINNYKCGYSSKKVTFKMVNTYDVNLFYSVIYNFIFKINVLVFVLILI
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
FYLNIFAYYGSYVFLNKLSFPKDYFIDTFLYYSDQDLSQINNYFFGLDASNYNATTIRKP
HHHHHHHHHCCEEEEECCCCCHHHHHHHHEEECCCHHHHHCCEEEEECCCCCCCEEECCC
FVLKVVEHKIKPGETLSHIASRYNITSETLISYNDIKDVRNIKPNVIINVPNMKGILYTV
HHHHHHHHCCCCCHHHHHHHHHCCCCHHHHEEHHHHHHHHCCCCCEEEECCCCCEEEEEE
GKNDSLSSIAKKYKIPKVDILDANNLDNEVLSLGQKLFVPGGKMSKDLLRNALGETFLFP
CCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHCCHHEECCCCCCHHHHHHHHHCCEEECC
TRGIITSGYGYRPDPFTKTISFHNGIDIANVANTPVVATKEGIVVTAGFSVGGYGKYIVI
CCCCEECCCCCCCCCCCEEEECCCCCCEEECCCCCEEEECCCEEEEECCCCCCCCCEEEE
AHNNGFQTLYAHLGSFAVKVGDRVSRGQMIGRMGSTGYSTGNHLHFTIFKDGKTSNPMKY
EECCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCHHH
LR
CC
>Mature Secondary Structure
MIIPKKDQNVFKRKKNFLFNRAVKGDFELRDFGNIRNFNKKKRKSCFCFFNVFTKFFYVF
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KLLFITLFGQIMDINNYKCGYSSKKVTFKMVNTYDVNLFYSVIYNFIFKINVLVFVLILI
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
FYLNIFAYYGSYVFLNKLSFPKDYFIDTFLYYSDQDLSQINNYFFGLDASNYNATTIRKP
HHHHHHHHHCCEEEEECCCCCHHHHHHHHEEECCCHHHHHCCEEEEECCCCCCCEEECCC
FVLKVVEHKIKPGETLSHIASRYNITSETLISYNDIKDVRNIKPNVIINVPNMKGILYTV
HHHHHHHHCCCCCHHHHHHHHHCCCCHHHHEEHHHHHHHHCCCCCEEEECCCCCEEEEEE
GKNDSLSSIAKKYKIPKVDILDANNLDNEVLSLGQKLFVPGGKMSKDLLRNALGETFLFP
CCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHCCHHEECCCCCCHHHHHHHHHCCEEECC
TRGIITSGYGYRPDPFTKTISFHNGIDIANVANTPVVATKEGIVVTAGFSVGGYGKYIVI
CCCCEECCCCCCCCCCCEEEECCCCCCEEECCCCCEEEECCCEEEEECCCCCCCCCEEEE
AHNNGFQTLYAHLGSFAVKVGDRVSRGQMIGRMGSTGYSTGNHLHFTIFKDGKTSNPMKY
EECCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCHHH
LR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]