Click here to switch to the map view.

The map label for this gene is hbb [H]

Identifier: 203284151

GI number: 203284151

Start: 248520

End: 248846

Strand: Reverse

Name: hbb [H]

Synonym: BDU_232

Alternate gene names: 203284151

Gene position: 248846-248520 (Counterclockwise)

Preceding gene: 203284152

Following gene: 203284150

Centisome position: 26.71

GC content: 30.28

Gene sequence:

>327_bases
ATGTCTTGTTCAAAGAGATCCAAAGTTACTAAATCAGATATTGTTGATCAAATATTTTTAAACATTAAAAATAATAATGA
AAAGTTGGAAAAGAAGTATATAAGACTTGTAGTTGATGCTTTTTTTGAAGAACTTAAAAACAGTCTTTGTGTTAATAATG
TTATAGAGTTTAGATCATTTGGTACATTTGAGCTTAGAAAGAGGAAGGGTCGCCAAAATGCTCGTAATCCTCAAACAGGT
GAATATGTGAATGTTGATGATCATCATGTTGCTTATTTTCGTCCAGGAAAAGATTTAAAAGAACGGGTTTGGAGCATTAA
AGGATAG

Upstream 100 bases:

>100_bases
AATTAGATACTGCTGCTAGAAAGCGAATAATACATATAAATAAAGCCGCACGTAAAAAGTCAAATTTGAGTATTTTGTTA
TTACAGTAAGGAACTAGCTT

Downstream 100 bases:

>100_bases
TTAATGCCTGTTAATGTTAAGGATTCTTACAAATGGGATTGTAAGCTTGATTCAAGTTTAATTTTTAGAGGAAAATTAAA
GTTTGAGGGTGCTTTATATC

Product: HbbU protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MSCSKRSKVTKSDIVDQIFLNIKNNNEKLEKKYIRLVVDAFFEELKNSLCVNNVIEFRSFGTFELRKRKGRQNARNPQTG
EYVNVDDHHVAYFRPGKDLKERVWSIKG

Sequences:

>Translated_108_residues
MSCSKRSKVTKSDIVDQIFLNIKNNNEKLEKKYIRLVVDAFFEELKNSLCVNNVIEFRSFGTFELRKRKGRQNARNPQTG
EYVNVDDHHVAYFRPGKDLKERVWSIKG
>Mature_107_residues
SCSKRSKVTKSDIVDQIFLNIKNNNEKLEKKYIRLVVDAFFEELKNSLCVNNVIEFRSFGTFELRKRKGRQNARNPQTGE
YVNVDDHHVAYFRPGKDLKERVWSIKG

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 12725; Mature: 12594

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCSKRSKVTKSDIVDQIFLNIKNNNEKLEKKYIRLVVDAFFEELKNSLCVNNVIEFRSF
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GTFELRKRKGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVWSIKG
CCHHHHHHHCCCCCCCCCCCCEECCCCCEEEEECCCHHHHHHHHCCCC
>Mature Secondary Structure 
SCSKRSKVTKSDIVDQIFLNIKNNNEKLEKKYIRLVVDAFFEELKNSLCVNNVIEFRSF
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GTFELRKRKGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVWSIKG
CCHHHHHHHCCCCCCCCCCCCEECCCCCEEEEECCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8995795 [H]