Click here to switch to the map view.

The map label for this gene is ybjZ [C]

Identifier: 20095091

GI number: 20095091

Start: 1660512

End: 1661624

Strand: Reverse

Name: ybjZ [C]

Synonym: MK1655

Alternate gene names: 20095091

Gene position: 1661624-1660512 (Counterclockwise)

Preceding gene: 20095092

Following gene: 20095090

Centisome position: 98.03

GC content: 48.34

Gene sequence:

>1113_bases
TTGATTACAATAAAGGTGGCGATTAGGAACATAGCTCGGAGGAGTGTCCGCTCACTACTCACGATCTTGGGAGTTGCTAT
CGGAGTTGCTGCCGTAGTGGGTATCTCAGCGATTGCGAAGGGATTACAACATGATGTTAAGGTGGCGATCAGTGGATCGG
CTTCACTGATAGTAAAATCAAAGGCTGCTCCCGACCCACTATCTAGTGTGCTCGATGAAAGTATTGAGGATGAAGTGAGA
AAGATACCGGGAGTAAAGCGTACGGTAGCTGTTTGGTTTAACAATAGGATGATTACAGTGGGCCGGCAACGTCAACCTAT
ATTAATCGCGGCGGTGGAAAATAGGGGCTATGAACTCGTAGTGGGGTCTAAAATAGAGCCCATAGAGGGCCACCTCCCTA
AACATGGTGAAATGGCCTTTGGGAGCCTTATATGGAGAAAATTACGACCTAAGGTAGGAGAGACCGTGGATTTATCTGGA
CAAAAGTTAAGGGTATCTGGAGCGTTCAAAACATCGTCGCAACTTGCTAACATGTGTGCGATTACTACTTTAGATAGCGT
CAATAAAATTCGAGGGAAAAGCATCAGTTGTGTGTTCGTTCAAACATCTGACCCGAAGCGAGTAAGGAAAGAAATAGAGT
CAAGAATAAACGGTGTTGAGGCCATCACAACTAGTAAGGCTGTTCAAGGGATGTTGAATAATTTGAGAACAGTTGAACTT
GCGGCTATAGCACTTACCGGGATCGCTGGGGTTGTAGGAGCGCTCGGAGTAGCCAATACTATGCTCATGTCAGTGATTGA
GAGAAAGCGTGAAATAGGCGTCATGAAGGCCATAGGAGCGACGAACAGAGACGTGATGAAGCTGTTCCTACTGGAGTCGA
TAATATTGTCCCTGGCGGGGGGGATCATAGGGTGCGTTCTCGGGATGTTGGGCTCACAACTGCTGGTCCACATCCTGTCG
TACATAAAGCATCAGACGGTGTCTGTACTTATAACGCCTGAGGTACTAGGGCTCGGACTAGCTCTGGCTTTAGCGATAGG
GGTGGTCTCGGGTCTGTACCCGGCGTGGAAAGCCGCTAAAGTTGACCCCGTCGAGGCCCTCAGGTACGAGTAG

Upstream 100 bases:

>100_bases
GAATCGGTTAAGGCTGAAGAGATAAAGAGAATATACGGGAGGCCTGTTAGGAGAGGAACACCTAAGAAGTCATTAGAATC
CATATAAGGGGAACGGACGC

Downstream 100 bases:

>100_bases
GGGGCGTTCAAATGTCGAACTACGTAATAAGACTGGAAAATGTTCGGAAAGTCTACAATTCAGGGTCGGTGAAGGTAGAA
GCGCTCAAAGGGGTGAGTCT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MITIKVAIRNIARRSVRSLLTILGVAIGVAAVVGISAIAKGLQHDVKVAISGSASLIVKSKAAPDPLSSVLDESIEDEVR
KIPGVKRTVAVWFNNRMITVGRQRQPILIAAVENRGYELVVGSKIEPIEGHLPKHGEMAFGSLIWRKLRPKVGETVDLSG
QKLRVSGAFKTSSQLANMCAITTLDSVNKIRGKSISCVFVQTSDPKRVRKEIESRINGVEAITTSKAVQGMLNNLRTVEL
AAIALTGIAGVVGALGVANTMLMSVIERKREIGVMKAIGATNRDVMKLFLLESIILSLAGGIIGCVLGMLGSQLLVHILS
YIKHQTVSVLITPEVLGLGLALALAIGVVSGLYPAWKAAKVDPVEALRYE

Sequences:

>Translated_370_residues
MITIKVAIRNIARRSVRSLLTILGVAIGVAAVVGISAIAKGLQHDVKVAISGSASLIVKSKAAPDPLSSVLDESIEDEVR
KIPGVKRTVAVWFNNRMITVGRQRQPILIAAVENRGYELVVGSKIEPIEGHLPKHGEMAFGSLIWRKLRPKVGETVDLSG
QKLRVSGAFKTSSQLANMCAITTLDSVNKIRGKSISCVFVQTSDPKRVRKEIESRINGVEAITTSKAVQGMLNNLRTVEL
AAIALTGIAGVVGALGVANTMLMSVIERKREIGVMKAIGATNRDVMKLFLLESIILSLAGGIIGCVLGMLGSQLLVHILS
YIKHQTVSVLITPEVLGLGLALALAIGVVSGLYPAWKAAKVDPVEALRYE
>Mature_370_residues
MITIKVAIRNIARRSVRSLLTILGVAIGVAAVVGISAIAKGLQHDVKVAISGSASLIVKSKAAPDPLSSVLDESIEDEVR
KIPGVKRTVAVWFNNRMITVGRQRQPILIAAVENRGYELVVGSKIEPIEGHLPKHGEMAFGSLIWRKLRPKVGETVDLSG
QKLRVSGAFKTSSQLANMCAITTLDSVNKIRGKSISCVFVQTSDPKRVRKEIESRINGVEAITTSKAVQGMLNNLRTVEL
AAIALTGIAGVVGALGVANTMLMSVIERKREIGVMKAIGATNRDVMKLFLLESIILSLAGGIIGCVLGMLGSQLLVHILS
YIKHQTVSVLITPEVLGLGLALALAIGVVSGLYPAWKAAKVDPVEALRYE

Specific function: Unknown

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family [H]

Homologues:

Organism=Escherichia coli, GI1787105, Length=135, Percent_Identity=37.7777777777778, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 39412; Mature: 39412

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIKVAIRNIARRSVRSLLTILGVAIGVAAVVGISAIAKGLQHDVKVAISGSASLIVKS
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEC
KAAPDPLSSVLDESIEDEVRKIPGVKRTVAVWFNNRMITVGRQRQPILIAAVENRGYELV
CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCCCEEEEEECCCCEEEE
VGSKIEPIEGHLPKHGEMAFGSLIWRKLRPKVGETVDLSGQKLRVSGAFKTSSQLANMCA
ECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCEEEEEECCCCHHHHHHHHH
ITTLDSVNKIRGKSISCVFVQTSDPKRVRKEIESRINGVEAITTSKAVQGMLNNLRTVEL
HHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHH
AAIALTGIAGVVGALGVANTMLMSVIERKREIGVMKAIGATNRDVMKLFLLESIILSLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
GIIGCVLGMLGSQLLVHILSYIKHQTVSVLITPEVLGLGLALALAIGVVSGLYPAWKAAK
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCHHCCC
VDPVEALRYE
CCHHHHHCCC
>Mature Secondary Structure
MITIKVAIRNIARRSVRSLLTILGVAIGVAAVVGISAIAKGLQHDVKVAISGSASLIVKS
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEC
KAAPDPLSSVLDESIEDEVRKIPGVKRTVAVWFNNRMITVGRQRQPILIAAVENRGYELV
CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCCCEEEEEECCCCEEEE
VGSKIEPIEGHLPKHGEMAFGSLIWRKLRPKVGETVDLSGQKLRVSGAFKTSSQLANMCA
ECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCEEEEEECCCCHHHHHHHHH
ITTLDSVNKIRGKSISCVFVQTSDPKRVRKEIESRINGVEAITTSKAVQGMLNNLRTVEL
HHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHH
AAIALTGIAGVVGALGVANTMLMSVIERKREIGVMKAIGATNRDVMKLFLLESIILSLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
GIIGCVLGMLGSQLLVHILSYIKHQTVSVLITPEVLGLGLALALAIGVVSGLYPAWKAAK
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCHHCCC
VDPVEALRYE
CCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]