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The map label for this gene is RpoZ [H]

Identifier: 20095016

GI number: 20095016

Start: 1592327

End: 1592497

Strand: Reverse

Name: RpoZ [H]

Synonym: MK1580

Alternate gene names: 20095016

Gene position: 1592497-1592327 (Counterclockwise)

Preceding gene: 20095018

Following gene: 20095015

Centisome position: 93.95

GC content: 56.73

Gene sequence:

>171_bases
ATGGAGGATCTGACACGGTTCGAGATCGCAAGGATCGTTGGAGCACGTGCCCTTCAGATCGCTATGGGATCACCTGTGCT
GGTAGAGGTCGAAGGCGATGAGGACCCGCTGGAAATTGCTAAAAGGGAGTTCGACGAGGGCGTTGTGCCCGTCGTGGTGA
TCCGCAGATAG

Upstream 100 bases:

>100_bases
ATGAAGAACCTTGTTCACTATTTGAGTTTTAGAGTTCACGTATTGTGTACTCAAGCAACGTATAAACAGTTCCGGCCCAA
GATCCACGGGGGAGTATCCT

Downstream 100 bases:

>100_bases
AGGGTATGCGGGGGTAAGGGAAGGTGCCGAAGGTCGTGATCGACTACGACGCGTGCGTCGGAGTATCGGAGTGTGGTGAA
TGTATCGAAGCCTGCCCGAT

Product: DNA-directed RNA polymerase subunit K/omega

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 56; Mature: 56

Protein sequence:

>56_residues
MEDLTRFEIARIVGARALQIAMGSPVLVEVEGDEDPLEIAKREFDEGVVPVVVIRR

Sequences:

>Translated_56_residues
MEDLTRFEIARIVGARALQIAMGSPVLVEVEGDEDPLEIAKREFDEGVVPVVVIRR
>Mature_56_residues
MEDLTRFEIARIVGARALQIAMGSPVLVEVEGDEDPLEIAKREFDEGVVPVVVIRR

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoK/eukaryotic RPB6 RNA polymerase subunit family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17531543, Length=52, Percent_Identity=55.7692307692308, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6325445, Length=52, Percent_Identity=51.9230769230769, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020708
- InterPro:   IPR006111
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 6235; Mature: 6235

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: PS01111 RNA_POL_K_14KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDLTRFEIARIVGARALQIAMGSPVLVEVEGDEDPLEIAKREFDEGVVPVVVIRR
CCCCHHHHHHHHHCCCEEEEECCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEEEC
>Mature Secondary Structure
MEDLTRFEIARIVGARALQIAMGSPVLVEVEGDEDPLEIAKREFDEGVVPVVVIRR
CCCCHHHHHHHHHCCCEEEEECCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824 [H]