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The map label for this gene is RPS1A

Identifier: 20094897

GI number: 20094897

Start: 1488365

End: 1489000

Strand: Direct

Name: RPS1A

Synonym: MK1461

Alternate gene names: 20094897

Gene position: 1488365-1489000 (Clockwise)

Preceding gene: 20094896

Following gene: 20094898

Centisome position: 87.81

GC content: 60.38

Gene sequence:

>636_bases
TTGGTCAGGGACAAGTGGAAGGATAAGGTATGGTACACGATCCTCGCGCCGGATATGTTCGACAATGTGGAAGTGGGCGA
GACGCCCGCCGACGACCCGGAGAAGGTGATAGGCCGGGTGCTCGAGACCACATTAGGTGACGTACTGGACGACATCACCA
AGCACCACATCAAGGTGTTCTTCCGCATCTACGACGTCGAGGGGACGACAGCGTACTCCAAGTTCGAAGGACACCGACTG
ATGCGCGACTACGTCCGCAGCCTGGTGAGGCGTGGAACGAGCAGGATCGACGGTGTCATCGACGTCGTCACCAAGGACGG
ATACAAGGTACGCGTCGCGGGTCTGGCGTTCACGACGCGACGGGCCAAGACATCCCAGCAGCGGGCCATCAGGAAGGAGA
TGTTCAAGGTGATCGAAGAGAACGCGAAGGAGTGCGACTTCGACGAGTTCATCCGCAGGTGCCTGTCGATCAGCGAAGAG
GAGAGCATCCCGGAGCAGATCAAGGAGGCGGGTCGTAAGATCTACCCGATCCGGCAAGCCGAGATCAGGAAGACGGAGGT
CCTAGAGGAGCCGAACGGCCTACCGCCATACGAAGCGGTGGGGGACCGGGCCACCCCGGAGCTGGCCAGCTACTGA

Upstream 100 bases:

>100_bases
TGGGCTACCCGAGGTACCGAAGACGCTAACCTGGCCGGAGTAGTCCGATCCCGATCCTTTTTTCAACGGCGCCTTCCGGC
GGGCCGGGGGGCTTGCGAGC

Downstream 100 bases:

>100_bases
GCCTCCCTCCGCAACGGTCTTCGGGCGCGTGCGACGGATGTTCCTAGTGAAAACGCAACGAAACCTGGAGGATGTAGCGG
CAGCGATGATCGAGGAGGAA

Product: 30S ribosomal protein S3Ae

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MVRDKWKDKVWYTILAPDMFDNVEVGETPADDPEKVIGRVLETTLGDVLDDITKHHIKVFFRIYDVEGTTAYSKFEGHRL
MRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFTTRRAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEE
ESIPEQIKEAGRKIYPIRQAEIRKTEVLEEPNGLPPYEAVGDRATPELASY

Sequences:

>Translated_211_residues
MVRDKWKDKVWYTILAPDMFDNVEVGETPADDPEKVIGRVLETTLGDVLDDITKHHIKVFFRIYDVEGTTAYSKFEGHRL
MRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFTTRRAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEE
ESIPEQIKEAGRKIYPIRQAEIRKTEVLEEPNGLPPYEAVGDRATPELASY
>Mature_211_residues
MVRDKWKDKVWYTILAPDMFDNVEVGETPADDPEKVIGRVLETTLGDVLDDITKHHIKVFFRIYDVEGTTAYSKFEGHRL
MRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFTTRRAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEE
ESIPEQIKEAGRKIYPIRQAEIRKTEVLEEPNGLPPYEAVGDRATPELASY

Specific function: Unknown

COG id: COG1890

COG function: function code J; Ribosomal protein S3AE

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S3Ae family

Homologues:

Organism=Homo sapiens, GI4506723, Length=213, Percent_Identity=30.5164319248826, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17553700, Length=204, Percent_Identity=31.3725490196078, Blast_Score=95, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6323577, Length=204, Percent_Identity=26.9607843137255, Blast_Score=86, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6323474, Length=208, Percent_Identity=27.8846153846154, Blast_Score=86, Evalue=6e-18,
Organism=Drosophila melanogaster, GI17864162, Length=208, Percent_Identity=29.8076923076923, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24638499, Length=165, Percent_Identity=30.9090909090909, Blast_Score=74, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS3A_METKA (Q8TVD1)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_614744.1
- GeneID:   1478056
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK1461
- NMPDR:   fig|190192.1.peg.1457
- HOGENOM:   HBG402643
- OMA:   GHDTTRE
- ProtClustDB:   PRK04057
- BioCyc:   MKAN190192:MK1461-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00359
- InterPro:   IPR001593
- InterPro:   IPR018281
- PANTHER:   PTHR11830

Pfam domain/function: PF01015 Ribosomal_S3Ae

EC number: NA

Molecular weight: Translated: 24376; Mature: 24376

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS01191 RIBOSOMAL_S3AE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRDKWKDKVWYTILAPDMFDNVEVGETPADDPEKVIGRVLETTLGDVLDDITKHHIKVF
CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRIYDVEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFTTR
HHEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHEECCCCEEEEEHHHHHHH
RAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQA
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCEECCCHHH
EIRKTEVLEEPNGLPPYEAVGDRATPELASY
HHHHHHHHHCCCCCCCHHHHCCCCCCHHCCC
>Mature Secondary Structure
MVRDKWKDKVWYTILAPDMFDNVEVGETPADDPEKVIGRVLETTLGDVLDDITKHHIKVF
CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRIYDVEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFTTR
HHEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHEECCCCEEEEEHHHHHHH
RAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQA
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCEECCCHHH
EIRKTEVLEEPNGLPPYEAVGDRATPELASY
HHHHHHHHHCCCCCCCHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014