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The map label for this gene is RPS6A

Identifier: 20094882

GI number: 20094882

Start: 1477629

End: 1478021

Strand: Direct

Name: RPS6A

Synonym: MK1446

Alternate gene names: 20094882

Gene position: 1477629-1478021 (Clockwise)

Preceding gene: 20094879

Following gene: 20094883

Centisome position: 87.18

GC content: 60.81

Gene sequence:

>393_bases
TTGCCCGAGTTCAAGGTAGTAGTGGCGGATCCGGAGAAGGCTCGCTCCTACCAGGTGGAGGTGAAAGGTGAGGATGCCGA
GAAGCTGATCGGGAAGAGGATCGGTGACGTGATCGACGGCGAAATCGTCGGTCTACCGGGGTACAAGCTCAAGATCACGG
GCGGAACGGACAAGGACGGGTTCCCGATGCGACCTGACATCCACGGACCGGTACGCGTTCGCCTACTCCTCAGCGGTCCG
CCGGGTTTCCGCCCCGAGCGTAAAGGTGAGCGGAGGCGTAAGACGGTTCGCGGTAACACGATCAGCGAGGATATCGTTCA
AGTGAACACCGTCATCGTCGAGTACGGCGACAAGCCCGTGGAGGAGTTACTCGGCGAGGGCGGCGAGGAGTAA

Upstream 100 bases:

>100_bases
CGAGGCCTTCCCTGAGCCCCGTTATGAAGTTTCGTCGGGGGTTCGGACGCGGTACAAGACTTAAAGTGAAGGGCGGGTTC
GGCGCGCTGGGGGTGGCCGC

Downstream 100 bases:

>100_bases
CCGCGGGTGGGTACCGTGCCCGTCGACTTACGACGAGTGGACGACGAGCGGTTCCAACAGGCCGAAATGAACATCGGAAT
GGTGGGGCACGTAGACCACG

Product: 30S ribosomal protein S6e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MPEFKVVVADPEKARSYQVEVKGEDAEKLIGKRIGDVIDGEIVGLPGYKLKITGGTDKDGFPMRPDIHGPVRVRLLLSGP
PGFRPERKGERRRKTVRGNTISEDIVQVNTVIVEYGDKPVEELLGEGGEE

Sequences:

>Translated_130_residues
MPEFKVVVADPEKARSYQVEVKGEDAEKLIGKRIGDVIDGEIVGLPGYKLKITGGTDKDGFPMRPDIHGPVRVRLLLSGP
PGFRPERKGERRRKTVRGNTISEDIVQVNTVIVEYGDKPVEELLGEGGEE
>Mature_129_residues
PEFKVVVADPEKARSYQVEVKGEDAEKLIGKRIGDVIDGEIVGLPGYKLKITGGTDKDGFPMRPDIHGPVRVRLLLSGPP
GFRPERKGERRRKTVRGNTISEDIVQVNTVIVEYGDKPVEELLGEGGEE

Specific function: Unknown

COG id: COG2125

COG function: function code J; Ribosomal protein S6E (S10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6e family

Homologues:

Organism=Homo sapiens, GI17158044, Length=92, Percent_Identity=42.3913043478261, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508687, Length=78, Percent_Identity=44.8717948717949, Blast_Score=63, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6325167, Length=98, Percent_Identity=44.8979591836735, Blast_Score=80, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6319658, Length=98, Percent_Identity=44.8979591836735, Blast_Score=80, Evalue=8e-17,
Organism=Drosophila melanogaster, GI17737290, Length=92, Percent_Identity=42.3913043478261, Blast_Score=75, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24640437, Length=90, Percent_Identity=41.1111111111111, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6E_METKA (Q8TVE6)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_614729.1
- GeneID:   1478041
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK1446
- NMPDR:   fig|190192.1.peg.1442
- HOGENOM:   HBG497422
- OMA:   DGFPMRP
- ProtClustDB:   PRK04290
- BioCyc:   MKAN190192:MK1446-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00512
- InterPro:   IPR001377
- InterPro:   IPR020924
- InterPro:   IPR018282
- PANTHER:   PTHR11502
- PANTHER:   PTHR11502:SF2

Pfam domain/function: PF01092 Ribosomal_S6e

EC number: NA

Molecular weight: Translated: 14323; Mature: 14191

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS00578 RIBOSOMAL_S6E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEFKVVVADPEKARSYQVEVKGEDAEKLIGKRIGDVIDGEIVGLPGYKLKITGGTDKDG
CCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCCC
FPMRPDIHGPVRVRLLLSGPPGFRPERKGERRRKTVRGNTISEDIVQVNTVIVEYGDKPV
CCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCHHHHHEEEEEEEECCCCCH
EELLGEGGEE
HHHHCCCCCC
>Mature Secondary Structure 
PEFKVVVADPEKARSYQVEVKGEDAEKLIGKRIGDVIDGEIVGLPGYKLKITGGTDKDG
CCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCCC
FPMRPDIHGPVRVRLLLSGPPGFRPERKGERRRKTVRGNTISEDIVQVNTVIVEYGDKPV
CCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCHHHHHEEEEEEEECCCCCH
EELLGEGGEE
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014