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The map label for this gene is POP4_2

Identifier: 20094652

GI number: 20094652

Start: 1206266

End: 1206589

Strand: Direct

Name: POP4_2

Synonym: MK1216

Alternate gene names: 20094652

Gene position: 1206266-1206589 (Clockwise)

Preceding gene: 20094651

Following gene: 161485662

Centisome position: 71.17

GC content: 59.88

Gene sequence:

>324_bases
TTGCCGATCACCCCGCGCAACATCGTCCGACACGAGCTCATTGGCCTGGAGTGTCGGGTGGTGAAGTCGCTCGGGCCCCC
GTACGAGGGCCTGGAAGGCAGGATCGTGGACGAAACGAAGAACACCCTGGTGTTGAAGACGGAGTCCGGTGAAAAGGTTA
TAGTGAAAGATCAGGTGCTGCTCGAGCTCAAGCTTCCGTCGGGCGAGAGGGTACGCGTTGACGGTGCCCTGCTCGTGGGT
CGTCCGGAGGAAAGGCTTTCTAAGCGGATCAAATACGCGGAGGTCGTGCGCGGTAGGTTCGATCCGGAGGACTACCTGGA
TTGA

Upstream 100 bases:

>100_bases
CCGGAAACCGACTCCAGCCCCCTCGCGCTCTCCATCGCGAGCCGCAGGAGGTCCCGACACGTCGCGGACCGGAAGACCTT
AACCCGGGGGCCCTTGGACA

Downstream 100 bases:

>100_bases
CGGGGGAGTATCGAATGGCGAAAGACATCGGGCTCGGCGTCAAGCCACCGCGGAGGGAGTGCGACGATCCGAACTGCCCG
TTCCACGGTAACCTGAGGGT

Product: RNAse P subunit P29

Products: NA

Alternate protein names: RNase P component 1

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MPITPRNIVRHELIGLECRVVKSLGPPYEGLEGRIVDETKNTLVLKTESGEKVIVKDQVLLELKLPSGERVRVDGALLVG
RPEERLSKRIKYAEVVRGRFDPEDYLD

Sequences:

>Translated_107_residues
MPITPRNIVRHELIGLECRVVKSLGPPYEGLEGRIVDETKNTLVLKTESGEKVIVKDQVLLELKLPSGERVRVDGALLVG
RPEERLSKRIKYAEVVRGRFDPEDYLD
>Mature_106_residues
PITPRNIVRHELIGLECRVVKSLGPPYEGLEGRIVDETKNTLVLKTESGEKVIVKDQVLLELKLPSGERVRVDGALLVGR
PEERLSKRIKYAEVVRGRFDPEDYLD

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG1588

COG function: function code J; RNase P/RNase MRP subunit p29

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 1 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP1_METKA (Q8TGY6)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_614499.1
- ProteinModelPortal:   Q8TGY6
- SMR:   Q8TGY6
- GeneID:   1477811
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK1216
- NMPDR:   fig|190192.1.peg.1212
- HOGENOM:   HBG704950
- OMA:   ISTKGRV
- ProtClustDB:   CLSK569098
- BioCyc:   MKAN190192:MK1216-MONOMER
- BRENDA:   3.1.26.5
- HAMAP:   MF_00754
- InterPro:   IPR002730
- Gene3D:   G3DSA:2.30.30.210

Pfam domain/function: PF01868 UPF0086; SSF101744 RNase_P_Rpp29

EC number: =3.1.26.5

Molecular weight: Translated: 12135; Mature: 12004

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPITPRNIVRHELIGLECRVVKSLGPPYEGLEGRIVDETKNTLVLKTESGEKVIVKDQVL
CCCCCHHHHHHHHCCCCEEEEHHCCCCCCCCCCEEEECCCCEEEEEECCCCEEEEECEEE
LELKLPSGERVRVDGALLVGRPEERLSKRIKYAEVVRGRFDPEDYLD
EEEECCCCCEEEECCEEEECCCHHHHHHHHHHHHHHCCCCCCHHCCC
>Mature Secondary Structure 
PITPRNIVRHELIGLECRVVKSLGPPYEGLEGRIVDETKNTLVLKTESGEKVIVKDQVL
CCCCHHHHHHHHCCCCEEEEHHCCCCCCCCCCEEEECCCCEEEEEECCCCEEEEECEEE
LELKLPSGERVRVDGALLVGRPEERLSKRIKYAEVVRGRFDPEDYLD
EEEECCCCCEEEECCEEEECCCHHHHHHHHHHHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014