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The map label for this gene is ybbK [C]

Identifier: 20094283

GI number: 20094283

Start: 803850

End: 804587

Strand: Reverse

Name: ybbK [C]

Synonym: MK0847

Alternate gene names: 20094283

Gene position: 804587-803850 (Counterclockwise)

Preceding gene: 20094284

Following gene: 20094281

Centisome position: 47.47

GC content: 55.01

Gene sequence:

>738_bases
TTGATCATACCGCTAGTGGTCGGAGGAGTACTGGCCCTCCTCGTGCTGGCGGCCTCGGTTCGGATAGTGAATCAATACGA
GCGAGGCGTACTCCTACGACTTGGACGGTACATTGGAACTAGGGAACCCGGTCTCAACTTCATCGTCCCGTTCATCGACA
AGATGATCAAGGTGGATCTTCGGGTCGTTACTCAGAACATACCGGCTCAGGAAGTCATCACCAAGGATAACGTACCGATT
AAAGTCGACGCCGTCATATACTACCGGGTAGTGGATCCCGTCTCCGCCGTGCTAAACGTCGAGGATTATGAAGAGGCCGT
GTTCAACCTGGCGCAAACCACACTGAGATCGGTGCTCGGTGAGGTCGACTTGGACGATATTCTAGCGAAGCGGGAGGAGC
TGAGCGAGCGTATTCGGGAGATCATAGACGAGAAGACGGAGGGATGGGGAATCCACGTCACCGGTGTCGAAATCCGCGAC
GTAATATTGCCCGAAGAGATGAGACGGGCGATAGCCCGACAGGCGGAAGCTGAACGGGATCGTCGAGCTAGGGTGATCCA
AGCGGAAGCGGAGAAACAGGCCGCACAGGATCTACGGAAGGCATCGGAGGTCTTAGGAGTGAACCCAGGCTTACTGAGGA
CCCTTCAGACGCTCTCCGAGGTCTCAGCGGAAGAGAACGTCACCATAGTGATCCCAGTACCGATTGAACTGTTAAAGCTC
TTGAAGGAGCCGGAGTAA

Upstream 100 bases:

>100_bases
CCGTCTCTAAGACCCGGTTACGGCGAGGGGAGCGGGTGGTCGTACTGGATGTAAAAGGTAATAAACTCGTAGTTAAGCGG
AGGAAAACCGGGGAGCGGCG

Downstream 100 bases:

>100_bases
CGTACGGCCATCCACGCGCAACCCTTCCACTTCCATCACGATGTGGCGGAGAGGGAGTATCTTCTGATCACCACCACCGT
CATCGTAGACCAAGCAGTTC

Product: membrane protease subunit stomatin/prohibitin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MIIPLVVGGVLALLVLAASVRIVNQYERGVLLRLGRYIGTREPGLNFIVPFIDKMIKVDLRVVTQNIPAQEVITKDNVPI
KVDAVIYYRVVDPVSAVLNVEDYEEAVFNLAQTTLRSVLGEVDLDDILAKREELSERIREIIDEKTEGWGIHVTGVEIRD
VILPEEMRRAIARQAEAERDRRARVIQAEAEKQAAQDLRKASEVLGVNPGLLRTLQTLSEVSAEENVTIVIPVPIELLKL
LKEPE

Sequences:

>Translated_245_residues
MIIPLVVGGVLALLVLAASVRIVNQYERGVLLRLGRYIGTREPGLNFIVPFIDKMIKVDLRVVTQNIPAQEVITKDNVPI
KVDAVIYYRVVDPVSAVLNVEDYEEAVFNLAQTTLRSVLGEVDLDDILAKREELSERIREIIDEKTEGWGIHVTGVEIRD
VILPEEMRRAIARQAEAERDRRARVIQAEAEKQAAQDLRKASEVLGVNPGLLRTLQTLSEVSAEENVTIVIPVPIELLKL
LKEPE
>Mature_245_residues
MIIPLVVGGVLALLVLAASVRIVNQYERGVLLRLGRYIGTREPGLNFIVPFIDKMIKVDLRVVTQNIPAQEVITKDNVPI
KVDAVIYYRVVDPVSAVLNVEDYEEAVFNLAQTTLRSVLGEVDLDDILAKREELSERIREIIDEKTEGWGIHVTGVEIRD
VILPEEMRRAIARQAEAERDRRARVIQAEAEKQAAQDLRKASEVLGVNPGLLRTLQTLSEVSAEENVTIVIPVPIELLKL
LKEPE

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=225, Percent_Identity=49.3333333333333, Blast_Score=197, Evalue=8e-51,
Organism=Homo sapiens, GI21686995, Length=225, Percent_Identity=49.3333333333333, Blast_Score=196, Evalue=1e-50,
Organism=Homo sapiens, GI38016911, Length=225, Percent_Identity=47.1111111111111, Blast_Score=190, Evalue=1e-48,
Organism=Homo sapiens, GI7657615, Length=231, Percent_Identity=38.5281385281385, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI7305503, Length=177, Percent_Identity=39.5480225988701, Blast_Score=135, Evalue=3e-32,
Organism=Homo sapiens, GI20149563, Length=140, Percent_Identity=32.8571428571429, Blast_Score=86, Evalue=3e-17,
Organism=Escherichia coli, GI1786697, Length=195, Percent_Identity=40, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1790616, Length=187, Percent_Identity=25.668449197861, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17569497, Length=246, Percent_Identity=41.0569105691057, Blast_Score=194, Evalue=5e-50,
Organism=Caenorhabditis elegans, GI17569493, Length=236, Percent_Identity=43.2203389830509, Blast_Score=193, Evalue=6e-50,
Organism=Caenorhabditis elegans, GI193209764, Length=244, Percent_Identity=41.8032786885246, Blast_Score=193, Evalue=8e-50,
Organism=Caenorhabditis elegans, GI25153583, Length=226, Percent_Identity=46.4601769911504, Blast_Score=187, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI71987612, Length=226, Percent_Identity=46.4601769911504, Blast_Score=187, Evalue=5e-48,
Organism=Caenorhabditis elegans, GI71987621, Length=227, Percent_Identity=46.2555066079295, Blast_Score=187, Evalue=5e-48,
Organism=Caenorhabditis elegans, GI17570161, Length=227, Percent_Identity=44.0528634361233, Blast_Score=184, Evalue=4e-47,
Organism=Caenorhabditis elegans, GI193210507, Length=227, Percent_Identity=44.0528634361233, Blast_Score=184, Evalue=4e-47,
Organism=Caenorhabditis elegans, GI17569499, Length=235, Percent_Identity=44.2553191489362, Blast_Score=179, Evalue=8e-46,
Organism=Caenorhabditis elegans, GI17570459, Length=241, Percent_Identity=41.9087136929461, Blast_Score=178, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI71989948, Length=229, Percent_Identity=44.5414847161572, Blast_Score=177, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI32566490, Length=211, Percent_Identity=47.39336492891, Blast_Score=169, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI71989955, Length=184, Percent_Identity=44.5652173913043, Blast_Score=145, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI32564147, Length=180, Percent_Identity=41.6666666666667, Blast_Score=136, Evalue=9e-33,
Organism=Caenorhabditis elegans, GI71989963, Length=124, Percent_Identity=45.9677419354839, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17542664, Length=155, Percent_Identity=29.6774193548387, Blast_Score=84, Evalue=5e-17,
Organism=Drosophila melanogaster, GI18860517, Length=223, Percent_Identity=51.1210762331839, Blast_Score=204, Evalue=5e-53,
Organism=Drosophila melanogaster, GI45556022, Length=245, Percent_Identity=44.8979591836735, Blast_Score=192, Evalue=2e-49,
Organism=Drosophila melanogaster, GI24657857, Length=232, Percent_Identity=46.9827586206897, Blast_Score=189, Evalue=1e-48,
Organism=Drosophila melanogaster, GI62484448, Length=230, Percent_Identity=47.3913043478261, Blast_Score=189, Evalue=1e-48,
Organism=Drosophila melanogaster, GI281365664, Length=232, Percent_Identity=46.9827586206897, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI62484274, Length=230, Percent_Identity=47.3913043478261, Blast_Score=188, Evalue=3e-48,
Organism=Drosophila melanogaster, GI28573263, Length=245, Percent_Identity=38.7755102040816, Blast_Score=172, Evalue=2e-43,
Organism=Drosophila melanogaster, GI281361631, Length=229, Percent_Identity=38.4279475982533, Blast_Score=167, Evalue=6e-42,
Organism=Drosophila melanogaster, GI281361633, Length=229, Percent_Identity=38.4279475982533, Blast_Score=167, Evalue=7e-42,
Organism=Drosophila melanogaster, GI21356845, Length=231, Percent_Identity=35.9307359307359, Blast_Score=165, Evalue=2e-41,
Organism=Drosophila melanogaster, GI45550506, Length=177, Percent_Identity=40.6779661016949, Blast_Score=135, Evalue=2e-32,
Organism=Drosophila melanogaster, GI281361635, Length=182, Percent_Identity=36.8131868131868, Blast_Score=129, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 27440; Mature: 27440

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIPLVVGGVLALLVLAASVRIVNQYERGVLLRLGRYIGTREPGLNFIVPFIDKMIKVDL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
RVVTQNIPAQEVITKDNVPIKVDAVIYYRVVDPVSAVLNVEDYEEAVFNLAQTTLRSVLG
HHHHCCCCHHHHHCCCCCCEEEEHEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC
EVDLDDILAKREELSERIREIIDEKTEGWGIHVTGVEIRDVILPEEMRRAIARQAEAERD
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHH
RRARVIQAEAEKQAAQDLRKASEVLGVNPGLLRTLQTLSEVSAEENVTIVIPVPIELLKL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
LKEPE
HCCCC
>Mature Secondary Structure
MIIPLVVGGVLALLVLAASVRIVNQYERGVLLRLGRYIGTREPGLNFIVPFIDKMIKVDL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
RVVTQNIPAQEVITKDNVPIKVDAVIYYRVVDPVSAVLNVEDYEEAVFNLAQTTLRSVLG
HHHHCCCCHHHHHCCCCCCEEEEHEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC
EVDLDDILAKREELSERIREIIDEKTEGWGIHVTGVEIRDVILPEEMRRAIARQAEAERD
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHH
RRARVIQAEAEKQAAQDLRKASEVLGVNPGLLRTLQTLSEVSAEENVTIVIPVPIELLKL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
LKEPE
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]