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The map label for this gene is ygcF [C]

Identifier: 20094254

GI number: 20094254

Start: 778042

End: 778800

Strand: Reverse

Name: ygcF [C]

Synonym: MK0818

Alternate gene names: 20094254

Gene position: 778800-778042 (Counterclockwise)

Preceding gene: 20094255

Following gene: 20094250

Centisome position: 45.95

GC content: 60.74

Gene sequence:

>759_bases
ATGGGGACAGGGGGCAGAGGTCGTCCGACGCCTGGATTGAACGTGTACGAGGTGTTCCTCTCACTGCAGGGAGAGGGCAA
GTTCGTGGGGGAGCCGCAGGCGTTCGTCCGATTCTCAGGGTGTAACCTGAGATGTGCATACTGTGACGAGCCAGCCTCCC
GAAGCAGCCGCCGGAGGGCCCTGATTCGACGTGTGAGCGGAGAGGTGGAGCTCGAGCTCCCGGTCCCATGCGGACCGGAG
GACGTCGTCGAAGTGCTGGTGGAATTAGAGGACCTGGAGGACACGTTCGGAACCGTCTCGTTGACCGGGGGAGAACCTCT
CGTCCAGCCGTGGGGCGCACTGAAGGAGTTGATCGAGAGGCTCCGTGAACGCGGGTTCCGGGTACTGCTCGAGACCAATG
CCTCACTACCTGACCGAGCTCCGTTGATCGACGAATTGGCGGATGTAGTTTCCGCGGACGTGAAACTGCCGTCACACGGA
CCCAACATGGACGATTTTCCCGACCGTTGTCTGAGGTTCCTCGAGAGGATCAGCGCGGAGGTTTACGCTAAGGTAGTACT
GGTGGACGAGGAATGTTACCAGCACGCTGAGAGCGCACTGAAGGGGCTTCATCGGCTGGGTGTAGAACCGATATACCTAC
AACCGGCGACGGGCTCTGAGCACGACCTCGAGGATCTTTGGGAGTTAGCCGGGCTGGTGAACGCCGACGTGCGGGTGTTG
CCGCAAGTGCACAAGCTCGTGGACTTCATCCCGAGGTGA

Upstream 100 bases:

>100_bases
CACTATCGGCCGAAGACTTGGCGGAGTACCTAGCGGACGAGTTGGAACGCAGGCTGGCGGGTGACAATCTGAAGGAACTA
CGCGTCCGGGTGGACGAAGG

Downstream 100 bases:

>100_bases
TTATCCTCGGAGCCACTATTCGGAGCGTCCTTCCGTGGGAGGGCGGCACCCCTCGATTCTCAGACACTCGGCGGCTACCG
CGTGACCGCGCTCGCAGCAC

Product: organic-radical-activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MGTGGRGRPTPGLNVYEVFLSLQGEGKFVGEPQAFVRFSGCNLRCAYCDEPASRSSRRRALIRRVSGEVELELPVPCGPE
DVVEVLVELEDLEDTFGTVSLTGGEPLVQPWGALKELIERLRERGFRVLLETNASLPDRAPLIDELADVVSADVKLPSHG
PNMDDFPDRCLRFLERISAEVYAKVVLVDEECYQHAESALKGLHRLGVEPIYLQPATGSEHDLEDLWELAGLVNADVRVL
PQVHKLVDFIPR

Sequences:

>Translated_252_residues
MGTGGRGRPTPGLNVYEVFLSLQGEGKFVGEPQAFVRFSGCNLRCAYCDEPASRSSRRRALIRRVSGEVELELPVPCGPE
DVVEVLVELEDLEDTFGTVSLTGGEPLVQPWGALKELIERLRERGFRVLLETNASLPDRAPLIDELADVVSADVKLPSHG
PNMDDFPDRCLRFLERISAEVYAKVVLVDEECYQHAESALKGLHRLGVEPIYLQPATGSEHDLEDLWELAGLVNADVRVL
PQVHKLVDFIPR
>Mature_251_residues
GTGGRGRPTPGLNVYEVFLSLQGEGKFVGEPQAFVRFSGCNLRCAYCDEPASRSSRRRALIRRVSGEVELELPVPCGPED
VVEVLVELEDLEDTFGTVSLTGGEPLVQPWGALKELIERLRERGFRVLLETNASLPDRAPLIDELADVVSADVKLPSHGP
NMDDFPDRCLRFLERISAEVYAKVVLVDEECYQHAESALKGLHRLGVEPIYLQPATGSEHDLEDLWELAGLVNADVRVLP
QVHKLVDFIPR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 27940; Mature: 27809

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTGGRGRPTPGLNVYEVFLSLQGEGKFVGEPQAFVRFSGCNLRCAYCDEPASRSSRRRA
CCCCCCCCCCCCCHHHHHEEECCCCCCCCCCCHHEEEECCCCEEEEECCCCCCHHHHHHH
LIRRVSGEVELELPVPCGPEDVVEVLVELEDLEDTFGTVSLTGGEPLVQPWGALKELIER
HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHH
LRERGFRVLLETNASLPDRAPLIDELADVVSADVKLPSHGPNMDDFPDRCLRFLERISAE
HHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VYAKVVLVDEECYQHAESALKGLHRLGVEPIYLQPATGSEHDLEDLWELAGLVNADVRVL
HHHHHEEECHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHH
PQVHKLVDFIPR
HHHHHHHHHCCC
>Mature Secondary Structure 
GTGGRGRPTPGLNVYEVFLSLQGEGKFVGEPQAFVRFSGCNLRCAYCDEPASRSSRRRA
CCCCCCCCCCCCHHHHHEEECCCCCCCCCCCHHEEEECCCCEEEEECCCCCCHHHHHHH
LIRRVSGEVELELPVPCGPEDVVEVLVELEDLEDTFGTVSLTGGEPLVQPWGALKELIER
HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHH
LRERGFRVLLETNASLPDRAPLIDELADVVSADVKLPSHGPNMDDFPDRCLRFLERISAE
HHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VYAKVVLVDEECYQHAESALKGLHRLGVEPIYLQPATGSEHDLEDLWELAGLVNADVRVL
HHHHHEEECHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHH
PQVHKLVDFIPR
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]