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The map label for this gene is LSM1

Identifier: 20093660

GI number: 20093660

Start: 209340

End: 209561

Strand: Direct

Name: LSM1

Synonym: MK0220

Alternate gene names: NA

Gene position: 209340-209561 (Clockwise)

Preceding gene: 20093658

Following gene: 20093661

Centisome position: 12.35

GC content: 53.6

Gene sequence:

>222_bases
TTGAGACCGCACGACTGTCTTCGGGACTTCTTGGACGATATCGTGATAGTGGAGCTGAAGACGGGCAAGACGTTGCGAGG
TAGGTTAGTGTCCTTCGACGGACACCTAAACCTGGTACTGGACGACTGCGTGGAGATAGATGAAGATTCCGAAGTCAGGC
TCGGACGTGTGTTGATCCGAGGAGACAGCGTCACCTTGATATCACCTGCCGAAGTCGGATGA

Upstream 100 bases:

>100_bases
GTAACTCCTCCAAAACTTCCTGAAGGTCCTTCTCCGAGATCGGATGTCGACGGGAAACCTTCATTCGCCAGCTCCCCCAG
CCGCACGGGGGTCGGACGGT

Downstream 100 bases:

>100_bases
GCTGCCAGGGGGAGTGAGGCTTGGCGAAGGGAACCCCCTCCTTTGGTAAGCGTAACAAGACGAAGACACACGTCAGGTGC
AGGAGATGCGGCCGTCGCGC

Product: small nuclear ribonucleoprotein (snRNP)-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MRPHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDCVEIDEDSEVRLGRVLIRGDSVTLISPAEVG

Sequences:

>Translated_73_residues
MRPHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDCVEIDEDSEVRLGRVLIRGDSVTLISPAEVG
>Mature_73_residues
MRPHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDCVEIDEDSEVRLGRVLIRGDSVTLISPAEVG

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the snRNP Sm proteins family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR001163
- InterPro:   IPR006649
- InterPro:   IPR022901 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8146; Mature: 8146

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDCVEIDEDSEVRLGRVLIR
CCHHHHHHHHHCCEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCCCCCCEEEEEEEEE
GDSVTLISPAEVG
CCCEEEECCCCCC
>Mature Secondary Structure
MRPHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDCVEIDEDSEVRLGRVLIR
CCHHHHHHHHHCCEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCCCCCCEEEEEEEEE
GDSVTLISPAEVG
CCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]