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The map label for this gene is 20093659

Identifier: 20093659

GI number: 20093659

Start: 208803

End: 209303

Strand: Reverse

Name: 20093659

Synonym: MK0219

Alternate gene names: NA

Gene position: 209303-208803 (Counterclockwise)

Preceding gene: 20093665

Following gene: 20093655

Centisome position: 12.35

GC content: 57.29

Gene sequence:

>501_bases
ATGAAGGTTTCCCGTCGACATCCGATCTCGGAGAAGGACCTTCAGGAAGTTTTGGAGGAGTTACGTGTATCGTCTGGGGT
TAGTCTCGGCGAAGTACTCACTGGTCTTGTGGAGGTCGCGTACGTCAAGGACGATGATATCGAGCGCTTGCTGATCAAGG
ACGGCAAGGTAATGGCCTTCGAACGACATGAGGGTTGGTTTCCCACGATTCATGCCCTCCTCCAACTCGATGAGGGGAAT
TACGGCCATGTGGTGATAGTGGATATGGGTGCCGTCAAGCCGGTGGCTTCCGGGGCCGATATCATGGTGCCGGGTATCGT
GGAAGTGCGGGGTGAGTTCGAGGAGGGTGACGGTGTAGTCGTCATCGACGAGCGCAACCGGCGGCCTCTCGCCGTGGGGA
TAGCCCTAATGAGTGCGAGGGAAATCGAAGAGTCTGAGAGGGGTCGAGCCGTCCGCAACGTCCATCACGTCGGGGACAGG
TTATGGGAAGCCCGCTTCTAA

Upstream 100 bases:

>100_bases
CCGTCTTCAGCTCCACTATCACGATATCGTCCAAGAAGTCCCGAAGACAGTCGTGCGGTCTCAAACCGTCCGACCCCCGT
GCGGCTGGGGGAGCTGGCGA

Downstream 100 bases:

>100_bases
CGCCGTCCGAACAGGCCCTTAATGACCTTAGACAACACTCCCTCCTTGTCTGGAACGGGCACCTCGTACTCGATACCCAC
TAGCTCCGCGGCCAGCTTCT

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MKVSRRHPISEKDLQEVLEELRVSSGVSLGEVLTGLVEVAYVKDDDIERLLIKDGKVMAFERHEGWFPTIHALLQLDEGN
YGHVVIVDMGAVKPVASGADIMVPGIVEVRGEFEEGDGVVVIDERNRRPLAVGIALMSAREIEESERGRAVRNVHHVGDR
LWEARF

Sequences:

>Translated_166_residues
MKVSRRHPISEKDLQEVLEELRVSSGVSLGEVLTGLVEVAYVKDDDIERLLIKDGKVMAFERHEGWFPTIHALLQLDEGN
YGHVVIVDMGAVKPVASGADIMVPGIVEVRGEFEEGDGVVVIDERNRRPLAVGIALMSAREIEESERGRAVRNVHHVGDR
LWEARF
>Mature_166_residues
MKVSRRHPISEKDLQEVLEELRVSSGVSLGEVLTGLVEVAYVKDDDIERLLIKDGKVMAFERHEGWFPTIHALLQLDEGN
YGHVVIVDMGAVKPVASGADIMVPGIVEVRGEFEEGDGVVVIDERNRRPLAVGIALMSAREIEESERGRAVRNVHHVGDR
LWEARF

Specific function: Unknown

COG id: COG2016

COG function: function code J; Predicted RNA-binding protein (contains PUA domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320844, Length=140, Percent_Identity=30, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022430
- InterPro:   IPR015266
- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR016437
- InterPro:   IPR004521 [H]

Pfam domain/function: PF01472 PUA [H]

EC number: NA

Molecular weight: Translated: 18517; Mature: 18517

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSRRHPISEKDLQEVLEELRVSSGVSLGEVLTGLVEVAYVKDDDIERLLIKDGKVMAF
CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCHHHHEECCCCEEEE
ERHEGWFPTIHALLQLDEGNYGHVVIVDMGAVKPVASGADIMVPGIVEVRGEFEEGDGVV
ECCCCCCHHHHHHEEECCCCCCEEEEEECCCCCCCCCCCCEEECCEEEEECCCCCCCCEE
VIDERNRRPLAVGIALMSAREIEESERGRAVRNVHHVGDRLWEARF
EEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVSRRHPISEKDLQEVLEELRVSSGVSLGEVLTGLVEVAYVKDDDIERLLIKDGKVMAF
CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCHHHHEECCCCEEEE
ERHEGWFPTIHALLQLDEGNYGHVVIVDMGAVKPVASGADIMVPGIVEVRGEFEEGDGVV
ECCCCCCHHHHHHEEECCCCCCEEEEEECCCCCCCCCCCCEEECCEEEEECCCCCCCCEE
VIDERNRRPLAVGIALMSAREIEESERGRAVRNVHHVGDRLWEARF
EEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]