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The map label for this gene is ycdX [C]

Identifier: 20093609

GI number: 20093609

Start: 165843

End: 166553

Strand: Direct

Name: ycdX [C]

Synonym: MK0169

Alternate gene names: 20093609

Gene position: 165843-166553 (Clockwise)

Preceding gene: 20093608

Following gene: 20093610

Centisome position: 9.78

GC content: 61.18

Gene sequence:

>711_bases
TTGCGCCTTCGGGCAGACCTGCATACCCACACGGTATACTCAGACGGCCACGGGACCCCGCTGGAGAACGTATTAGCGGC
GGAAGAGCGGGGACTCGAGACGGTCGCATTAACCGATCACGGTCCCGCATCACCCGACGGTCTCACGGATCGGTCCTTCA
GACGTCTCGTGGCGGAAGCCAGGGAGGCGGAGAAACTCTGCTCGGTTCGGGTGTATGTTGGTGTGGAAGCGAACATCGTG
TCAATCTCGGGAGAGATAGACGCAACACCGGCGATGCTCAGCGAGTCCGACATCGTGCTGGCCGCCATCCACAACCCTCG
TCTGATACTGGCGAACCCGGGAAGTGCGGAAGAACTACGACGCGCGATCGTACACGCGACGATCAGGTGCATAGAGAGTG
GAGAGGTACACATAATCGCGCACCCGGTGTGGATCCTGGAGCAGCTCCGATGTTACATAACCGCACAGGAGGCGGAAGAA
ATCGCCCGGGTGGCCGCCGATCACAACGTCGGGCTGGAGCTTAACGCGCGGCATCTCCCCAGGGACTTCACCTTATACCA
AGTCGCGATTCGGGTAGGGGCACCGATCACGTTCGGTAGCGACGCCCACGCACCTGAGGAAGTGGGGCGGTTCAAGCCGC
TCCAGAAGCTAGCCCGAAGGCTCGGTATCGAACCGCAGGATGTACACCCGGAGGAGCTGGGGATCGTCTGA

Upstream 100 bases:

>100_bases
CGCGATCGTAGCCGCGGAGCCGAAGACCTTGGAGCCCGAGATAAGACTCAAGGCTCTGAAGTGAAGTACCCAGAGCGTAA
AGCGGCCGGGAAGGCTCCCG

Downstream 100 bases:

>100_bases
CCCTGAGGACCTTAAACGTCGACTGGGAGGCGGTCAAAGACGCGCTGAGCGATACCGAGGAACCGGAAGAGCTTGCTGAG
CTACTGAATCCCCCCGAACT

Product: phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MRLRADLHTHTVYSDGHGTPLENVLAAEERGLETVALTDHGPASPDGLTDRSFRRLVAEAREAEKLCSVRVYVGVEANIV
SISGEIDATPAMLSESDIVLAAIHNPRLILANPGSAEELRRAIVHATIRCIESGEVHIIAHPVWILEQLRCYITAQEAEE
IARVAADHNVGLELNARHLPRDFTLYQVAIRVGAPITFGSDAHAPEEVGRFKPLQKLARRLGIEPQDVHPEELGIV

Sequences:

>Translated_236_residues
MRLRADLHTHTVYSDGHGTPLENVLAAEERGLETVALTDHGPASPDGLTDRSFRRLVAEAREAEKLCSVRVYVGVEANIV
SISGEIDATPAMLSESDIVLAAIHNPRLILANPGSAEELRRAIVHATIRCIESGEVHIIAHPVWILEQLRCYITAQEAEE
IARVAADHNVGLELNARHLPRDFTLYQVAIRVGAPITFGSDAHAPEEVGRFKPLQKLARRLGIEPQDVHPEELGIV
>Mature_236_residues
MRLRADLHTHTVYSDGHGTPLENVLAAEERGLETVALTDHGPASPDGLTDRSFRRLVAEAREAEKLCSVRVYVGVEANIV
SISGEIDATPAMLSESDIVLAAIHNPRLILANPGSAEELRRAIVHATIRCIESGEVHIIAHPVWILEQLRCYITAQEAEE
IARVAADHNVGLELNARHLPRDFTLYQVAIRVGAPITFGSDAHAPEEVGRFKPLQKLARRLGIEPQDVHPEELGIV

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=230, Percent_Identity=29.1304347826087, Blast_Score=77, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 25847; Mature: 25847

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRADLHTHTVYSDGHGTPLENVLAAEERGLETVALTDHGPASPDGLTDRSFRRLVAEA
CCEECCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
REAEKLCSVRVYVGVEANIVSISGEIDATPAMLSESDIVLAAIHNPRLILANPGSAEELR
HHHHHHHEEEEEEECEEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCHHHHH
RAIVHATIRCIESGEVHIIAHPVWILEQLRCYITAQEAEEIARVAADHNVGLELNARHLP
HHHHHHHHHHCCCCCEEEEECHHHHHHHHHHEEEHHHHHHHHHHHCCCCCCEEECCCCCC
RDFTLYQVAIRVGAPITFGSDAHAPEEVGRFKPLQKLARRLGIEPQDVHPEELGIV
CCHHHHEEEEHHCCCEEECCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCHHHCCCC
>Mature Secondary Structure
MRLRADLHTHTVYSDGHGTPLENVLAAEERGLETVALTDHGPASPDGLTDRSFRRLVAEA
CCEECCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
REAEKLCSVRVYVGVEANIVSISGEIDATPAMLSESDIVLAAIHNPRLILANPGSAEELR
HHHHHHHEEEEEEECEEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCHHHHH
RAIVHATIRCIESGEVHIIAHPVWILEQLRCYITAQEAEEIARVAADHNVGLELNARHLP
HHHHHHHHHHCCCCCEEEEECHHHHHHHHHHEEEHHHHHHHHHHHCCCCCCEEECCCCCC
RDFTLYQVAIRVGAPITFGSDAHAPEEVGRFKPLQKLARRLGIEPQDVHPEELGIV
CCHHHHEEEEHHCCCEEECCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA